Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme578g00001 ATGAGATATGATTTGGGTTCCATCACAAACTTAGAATACAGGTACAAAGATGATGTTTATGACCGCATTTGGTTGCCCTATGAATCTAGTGATTGGAGACGATTAACCACCTCACTTATCAATGATGATCTAGTTCAGAATACTTATAAACCACCAGCAATTGTTATGAGCACTGCTGTTACACCAATAAATGCCACTGCCCCTTTACAATTTCATTGGGATGCAGATGATGTAAATGATCAATACTACGTCTACAGGCACTTTAATGAGGTTGAAGAGCTGGCAGCAAATGAAACTAGAACGTTCAATATGATAGTGAGTGCAGACAATTGGTATGGACCCATGACACCTCAATTTAAGGTAACAAATACCTTATTCAGTACAAAACCTTTGACTGGAGCCACAAGGTATCAAGTTTCCTTTTCTAAGACAAAGAATTCAACCCTTCCACCCATCATCAATGCCATTGAGGTTTATAAAGTAAAAGACTTCTCACAATTAGAAACAGAACTAGATGATGTTGATACAATCACAAACATCAAGAATGCTTATGGGGTGGCTAGGAATTGGCAAGGAGATCCATGTGGTCCTGCAAAGTATATGTGGGAAGGCCTAAATTGCAGTTTTAATGGCTTAAATCCCCCAAGAATCACATCTTTGAATTTGTCATCAAGTGGACTGACAGGGCAGATACATTATTCCTTATCAAAGCTCACTATGTTACAGTACTTGGATTTATCAAACAATAGCTTAAACGGTCCCTTACCTGTTTTTTTGAACAAGCTGGAGTCTCTAAAAGTCTTAAATGTGGATATGAACAAACTTACAGGGTTAGTTCCACCTGAACTCCTTGACAGATCAAAAACAGATTCACTGTCACTTAGCGTGGATGATAATCCTGGTCTTTGTACGACGGAATCTTGTGGAAAGAAGAGTTCGCATGTACCACTGATTGCTTCAATTTCAGCAATTATTGTTGTAATCCTCTTACTTTCTTTTGGATTTTGGATATTCAGAAGACATAAAGTTACGTCTAGAAATTCCAAGAAAAGGGGTTCACTGATATCAAAACAGCAGACATTCAGTTACACTGAAATTCTCAATATTACTAATAACTTCAAAACTATTGTTGGAGAAGGAGGATTTGGAAAAGTTTATGTCGGCGTTCTACAAAATCACACCCAAGTTGCGGTTAAGATACTTTCACCATCCTCAATGCAAGGTTATAAGGAATTTCAATCAGAGGCACAACTTTTAATGATTGTTCATCATAGAAATTTGGTCTCTCTCATTGGATATTGTGATGAAGATGAAATCAAAGCATTGGTTTATGAATACATGGCCAATGGAAATCTCCAACAACACTTATCAGTTAAAAATACAAATATCTTAACATGGAATGAGAGGCTTAACATTGCAGTTGATGTAGCACACGGATTGGATTATCTACATAATGGATGTAAACCACCTATTATGCATAGAGATTTGAARCCATCCAACATATTACTAGATGAAAACATGCATGCCAAGATTGCAGATTTTGGTCTAAGTAGAGCTTTTGGTGATGATAGTGATTCTCATATATTAACGCACCCTGCCGGTACACTTGGTTACGCTGATCCTGA 1625 0.3717 MRYDLGSITNLEYRYKDDVYDRIWLPYESSDWRRLTTSLINDDLVQNTYKPPAIVMSTAVTPINATAPLQFHWDADDVNDQYYVYRHFNEVEELAANETRTFNMIVSADNWYGPMTPQFKVTNTLFSTKPLTGATRYQVSFSKTKNSTLPPIINAIEVYKVKDFSQLETELDDVDTITNIKNAYGVARNWQGDPCGPAKYMWEGLNCSFNGLNPPRITSLNLSSSGLTGQIHYSLSKLTMLQYLDLSNNSLNGPLPVFLNKLESLKVLNVDMNKLTGLVPPELLDRSKTDSLSLSVDDNPGLCTTESCGKKSSHVPLIASISAIIVVILLLSFGFWIFRRHKVTSRNSKKRGSLISKQQTFSYTEILNITNNFKTIVGEGGFGKVYVGVLQNHTQVAVKILSPSSMQGYKEFQSEAQLLMIVHHRNLVSLIGYCDEDEIKALVYEYMANGNLQQHLSVKNTNILTWNERLNIAVDVAHGLDYLHNGCKPPIMHRDLKPSNILLDENMHAKIADFGLSRAFGDDSDSHILTHPAGTLGYADP 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme578g00001 541 FunFam Leucine-rich repeat receptor-like protein kinase 347 446 - -
Trme578g00001 541 Gene3D Transferase(Phosphotransferase) domain 1 447 541 - -
Trme578g00001 541 SMART serkin_6 371 541 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme578g00001 541 PANTHER OS07G0107800 PROTEIN-RELATED 2 541 - -
Trme578g00001 541 SUPERFAMILY Protein kinase-like (PK-like) 353 541 IPR011009 -
Trme578g00001 541 ProSiteProfiles Protein kinase domain profile. 371 541 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme578g00001 541 FunFam Leucine-rich repeat receptor-like kinase 172 305 - -
Trme578g00001 541 FunFam Os07g0541700 protein 447 535 - -
Trme578g00001 541 SUPERFAMILY L domain-like 174 300 - -
Trme578g00001 541 Gene3D Phosphorylase Kinase; domain 1 343 446 - -
Trme578g00001 541 Pfam Protein tyrosine and serine/threonine kinase 373 525 IPR001245 GO:0004672|GO:0006468
Trme578g00001 541 ProSitePatterns Protein kinases ATP-binding region signature. 377 399 IPR017441 GO:0005524
Trme578g00001 541 Pfam Malectin-like domain 2 161 IPR024788 -
Trme578g00001 541 ProSitePatterns Serine/Threonine protein kinases active-site signature. 491 503 IPR008271 GO:0004672|GO:0006468
Trme578g00001 541 Gene3D Ribonuclease Inhibitor 174 295 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme578g00001 Trme-Chr578 402 3912 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme578g00001 2 541 Receptor kinase-like Gene Family AT2G19230 48.723 3.95e-177 520
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Trme578g00001 PK_Tyr_Ser-Thr 7.3e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme578g00001 - - mtr:25500366 751.895