Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme5787g00001 CAACAAGAAATAGAAAAAGCTGGACTAGACCATGTAAAAAGCAAATATTTATCAAAACTTCTAGAGGAAGACATTAGATCCTCTGAATGCAACTTTTCATTTGATCCAAGGCTTAAAGAGACAAAGGTTCTTCTTGTTTTTGATGATGTAAAAGATTCTGATCAACTTAAAGATTTAATTGGAACTCATAGTAACTTTGGTCAGGGGAGTAGAATCATTGTGACTAGTAGAGACAAGCAAGTGCTGGTGAATGCCAATGCTGATGAAATATATGAAGTTAGGGGAATGGATCATCAAGATTCTCTAGAGCTCTTCTGTTTATTTGCCTTTAAACAAAATCATCCAATAGAATCTTATGTGAGCTTAGTGGAAAAGTTTTTAGATTATGCTAAAGGGCTTCCGTTAGCTCTCAAAGTTTTGGGCTCATTGCTTTACGGTAAAACAAAGGAAGTATGGGATAGTCAACTGCAAAAGCTTAAAAAGCTTCCTGATCTTAAAATTTTCAGATTGTTGAAATTGAGTTATGATGGACTTGACGACGAACAAAAGGATATATTTCTTGACATTGCTTGCTTCTATAGAGGAGAATTGGAGAATGCAGTAGCACAAATATTAGATTATTGTGGTTTCTCTGCTCGCGTTGGAATGGATGTTCTCAAGGATAGGTGCCTTATATCTATTTTAGAAGGTAAAATTTGGATGCATGATCTAATACAAGAAATGGGGCATGAAACTGTCCGACTTCAATGTGTCAATGATCCTGGAAAACGTAGTCGATTATGGAAGTCTAACGACATTTACGATGTTCTAAGGAAAAGGAACAGATGCAATCCAGTGTATGTTCCTAAACACAAAGGAAATAAAGAAAGTTCAACTACATGA 882 0.3549 QQEIEKAGLDHVKSKYLSKLLEEDIRSSECNFSFDPRLKETKVLLVFDDVKDSDQLKDLIGTHSNFGQGSRIIVTSRDKQVLVNANADEIYEVRGMDHQDSLELFCLFAFKQNHPIESYVSLVEKFLDYAKGLPLALKVLGSLLYGKTKEVWDSQLQKLKKLPDLKIFRLLKLSYDGLDDEQKDIFLDIACFYRGELENAVAQILDYCGFSARVGMDVLKDRCLISILEGKIWMHDLIQEMGHETVRLQCVNDPGKRSRLWKSNDIYDVLRKRNRCNPVYVPKHKGNKESSTT 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme5787g00001 293 PRINTS Disease resistance protein signature 37 51 - -
Trme5787g00001 293 PRINTS Disease resistance protein signature 130 144 - -
Trme5787g00001 293 Pfam NB-ARC domain 38 161 IPR002182 GO:0043531
Trme5787g00001 293 Gene3D - 2 91 IPR027417 -
Trme5787g00001 293 Gene3D - 96 179 IPR042197 -
Trme5787g00001 293 SUPERFAMILY "Winged helix" DNA-binding domain 166 270 IPR036390 -
Trme5787g00001 293 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 6 270 IPR044974 GO:0006952
Trme5787g00001 293 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 36 189 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme5787g00001 Trme-Chr5787 3 1054 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme5787g00001 37 266 WRKY Transcription Factor Family AT5G45050 38.095 7.12e-44 157
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme5787g00001 - - tpra:123916959 449.129