Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme57878g00001 ACCGAAGAAGCCATAGCACAGGCGATAATCCGGGGTAATGTAGATTTCACAAGAGATCCTTGGCCAAAAGTTTCAGACGAAGCCAAATACCTTGTTAAGCGTATGCTTGATCCAAATCCATTCACCAGAATCACAGTTCAAGAAGTTCTTGATCATTCATGGATACAACATAGGGAGCATGGTAGAAATGTTTCTCTTGGAGATCAAGTAAGAATGAGGATCAAACAATTCTCCTTGATGAACAGATTCAAAAAGAAAGTCCTTAGAGTGGTGGCTGATAACTTGCCAGATGAACAACTTGATGGGTTTAGGCAAATGTTTGATATGATGGACAAGGATAAAAATGGTTACTTAACATTTGAAGAGCTTAAAGATGGCTTTTCAATGATTGG 392 0.3878 TEEAIAQAIIRGNVDFTRDPWPKVSDEAKYLVKRMLDPNPFTRITVQEVLDHSWIQHREHGRNVSLGDQVRMRIKQFSLMNRFKKKVLRVVADNLPDEQLDGFRQMFDMMDKDKNGYLTFEELKDGFSMIG 131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme57878g00001 131 SUPERFAMILY Protein kinase-like (PK-like) 3 63 IPR011009 -
Trme57878g00001 131 Gene3D Transferase(Phosphotransferase) domain 1 1 62 - -
Trme57878g00001 131 SUPERFAMILY EF-hand 81 131 IPR011992 -
Trme57878g00001 131 ProSitePatterns EF-hand calcium-binding domain. 111 123 IPR018247 -
Trme57878g00001 131 Pfam EF hand 103 129 IPR002048 GO:0005509
Trme57878g00001 131 SMART efh_1 102 130 IPR002048 GO:0005509
Trme57878g00001 131 PANTHER SERINE/THREONINE-PROTEIN KINASE 1 123 - -
Trme57878g00001 131 Gene3D - 63 131 - -
Trme57878g00001 131 ProSiteProfiles EF-hand calcium-binding domain profile. 98 131 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme57878g00001 Trme-Chr57878 181 898 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme57878g00001 1 131 EF-hand Containing Proteins AT2G31500 67.939 9.38e-60 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Trme57878g00001 EF-hand_1 3.5e-08 CL0220
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme57878g00001 K13412 - gmx:100801716 235.343