Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme57849g00001 CAGGTTGAAGCAAAAAAAGCTGTTCCGAGAGATGATCAGAATGTGTTTAGCAGAAGCAACAGCAGCAGTCATGGATCGCCTGGTCCTACTCCTATACGCACAAAGAAGATATTTGTCGGAGGTTTAGCATCGACAGTTACTGAGAGTGATTTTAAGAATTACTTTGATCAATTTGGAACAATTACTGATGTTGTTGTGATGTATGACCATAACACTCAACGGCCTAGAGGTTTTGGATTCATCACATATGATTCTGAGGAAGCAGTCGAGAAAGTGTTGCACAAAACTTTTCATGAACTTAATGGTAAAATGGTTGAAGTTAAGAGGGCTGTCCCGAAGGAATTATCTCCAGGTCCAAGTAGAGGCCAGCTAGGTGGATTTAGTTACGGTACTATGAGTAGAGTTGGTAGTTTTTCTAATGGTTTCACTCAGGGATATAGTCCAAGCCTCATTGGAGGACATGGACTTAGATTAGACGGTAGATTGAGTCCTGCTAATGTTGGTCGTAGTGGATATACTCTTTTTAGTCCAAGTTACGGGACAGGACTCAACTTTGAGACACCATTGAGCCAAAATGAAAATGAAAGCTTTATGTCTAACTTTGTCACGGGACGGACATTGAGCTCTCCATACAGTGCAAGTCCGAGCAGGTACAATAATGCCATAGGGTATGTTGGTTCCAATGTTGGCAACAATTCAGCCATAAGTTCAACAAATCAGAGTTTGTGGAGTAATGGAAATCTTAACTATGCTAATAACCCTGCAAGCTCTGATGCTTTCGTGGGTTACGGAAGTGAAAATTCAAGTTTGGGTTCTTTTGGTAATATCGGATCACTTTGGAGTACTTCTGTTGGGGGTACTACTAATCAAGCCGGAACTATCGGCTCTGGATATGGT 897 0.4158 QVEAKKAVPRDDQNVFSRSNSSSHGSPGPTPIRTKKIFVGGLASTVTESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLHKTFHELNGKMVEVKRAVPKELSPGPSRGQLGGFSYGTMSRVGSFSNGFTQGYSPSLIGGHGLRLDGRLSPANVGRSGYTLFSPSYGTGLNFETPLSQNENESFMSNFVTGRTLSSPYSASPSRYNNAIGYVGSNVGNNSAISSTNQSLWSNGNLNYANNPASSDAFVGYGSENSSLGSFGNIGSLWSTSVGGTTNQAGTIGSGYG 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme57849g00001 299 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 1 291 - -
Trme57849g00001 299 MobiDBLite consensus disorder prediction 1 33 - -
Trme57849g00001 299 MobiDBLite consensus disorder prediction 13 29 - -
Trme57849g00001 299 SMART rrm1_1 36 108 IPR000504 GO:0003723
Trme57849g00001 299 SUPERFAMILY RNA-binding domain, RBD 26 138 IPR035979 GO:0003676
Trme57849g00001 299 FunFam Heterogeneous nuclear ribonucleoprotein 1 32 119 - -
Trme57849g00001 299 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 37 95 IPR000504 GO:0003723
Trme57849g00001 299 CDD RRM2_Hrp1p 36 113 - -
Trme57849g00001 299 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 35 112 IPR000504 GO:0003723
Trme57849g00001 299 Gene3D - 32 118 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme57849g00001 Trme-Chr57849 3 899 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme57849g00001 34 111 Eukaryotic Initiation Factors Gene Family AT1G49760 32.911 5.27e-07 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme57849g00001 K14411 - qsa:O6P43_031333 406.757