Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme577980g00001 ATGGCTCCTCAAATGGCTATTGTTGCTGAGACCGGCGAACGCGTAGATGTCAATGATGTTAAGATCAATACCATCCTTGCAGTCAAGGCTGGTGATGCTGTTCCTCTTGATGGAATTGTGGTGGATGGAAAATGTGAAGTTGATGAAAAAATGTTAACAGGAGAATCATTCCCTGTCACAAAAGAATTAGATTCACTTGTTTGGGCTGGAACTATTAATATGAATG 226 0.4071 MAPQMAIVAETGERVDVNDVKINTILAVKAGDAVPLDGIVVDGKCEVDEKMLTGESFPVTKELDSLVWAGTINMN 75
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme577980g00001 75 Gene3D - 1 75 - -
Trme577980g00001 75 PANTHER CADMIUM/ZINC-TRANSPORTING ATPASE HMA2-RELATED 1 75 - -
Trme577980g00001 75 Pfam E1-E2 ATPase 9 75 - -
Trme577980g00001 75 SUPERFAMILY Calcium ATPase, transduction domain A 11 75 IPR008250 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme577980g00001 Trme-Chr577980 16 241 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme577980g00001 1 75 Primary Pumps ATPases AT4G30110 66.667 1.33e-31 113
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme577980g00001 K01534 - gmx:100815324 137.887