Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme57624g00001 ATGCATGGTATTTGCCTGGAAGCATTTTGCCTCNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNATGTATCAGTCGAAGAGAGCCTGAGGAGCCTGAAGATGCAACTAAGGGAAGAGATGTGTTCAATGAAAAGCCTCCCGCTGATGAACTTTTGGCAGTTTCAGATATTGGAAAGGCACTTACAACATCACTTCCTGACAATGTGATTATGCACACCACTATGGGTGATATTCACATGAAGTTATACCCAGAGGAATGTCCAAAATCTGTGGAAAACTTTACAACTCACTGCAAAAACGGCTACTATGACAATCTTATTTTTCACAGGGTCATCAAAGGCTTCATGATACAAACAGGAGATCCTTTAGGAGACGGCACTGGTGGGCAATCCATTTGGGGAAGAGAATTTGAAGATGAATTTCACAAAAG 497 0.336 MHGICLEAFCLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCISRREPEEPEDATKGRDVFNEKPPADELLAVSDIGKALTTSLPDNVIMHTTMGDIHMKLYPEECPKSVENFTTHCKNGYYDNLIFHRVIKGFMIQTGDPLGDGTGGQSIWGREFEDEFHK 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme57624g00001 165 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 125 142 IPR020892 GO:0003755|GO:0006457
Trme57624g00001 165 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED 86 165 IPR044666 -
Trme57624g00001 165 SUPERFAMILY Cyclophilin-like 85 164 IPR029000 -
Trme57624g00001 165 Gene3D - 78 165 IPR029000 -
Trme57624g00001 165 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 91 164 IPR002130 GO:0000413|GO:0003755
Trme57624g00001 165 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 104 119 IPR002130 GO:0000413|GO:0003755
Trme57624g00001 165 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 130 142 IPR002130 GO:0000413|GO:0003755
Trme57624g00001 165 Coils Coil 11 11 - -
Trme57624g00001 165 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 87 165 IPR002130 GO:0000413|GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme57624g00001 Trme-Chr57624 22 810 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme57624g00001 91 162 U-box Gene Family AT5G67530 51.389 4.39e-21 87.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme57624g00001 K12736 - gmx:100801887 249.21