Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme5756g00001 ATGCTCCAATCATCTTCCTCTTACATTTCTTATGGATTCACCTACGATGTGTTCCTCAGTTTTAGGGGCATTGACACCCGCTATGGTTTTATTGGCAATATCTACAAAGCACTACATGAAGCTGGAATTCACACCTTCATTGATGATAAAGAGCTTCATGGAGGTGACGAAATCACACCATCACTTGTCAAGGCCATTGAAGAGTCTAGGATTTTCATTCCAGTCTTCTCTATCAACTATGCTTCTTCTTCGTTTTGTTTGGACGAACTTGTCCACATCATTCACTGTTTCAAGACAAAGGGTTGCTTGGTTTTGCCTGTTTTCTATGATGTGGAACCTACTCATGTTCGACATCAGACTGAGAGTTATGGTGAAGCAATAACTAAGCATGAAAAGGTGTTTCAAAATAACAAAGAAAAGTACAACAATAACATGGAGAGACTACATAAATGGAAGATGGCTCTTAACCAAGCAGCTAACTTGTCCGGCCACTATTTCAATCCTAGGAATGGATATGAATACGAGTTTATTCAAGAAATAGTCAAATATGTATCCAACAAGATTAATCGTGATCCTTTAGATGTTGTCGATTACCCTGTTGGCCTGTTGGATCGTGTCCTAAAAGTAAATTCACTTCTAGAAGTTGGATCTAATGATGAAGTCAAGATGCTAGGGATATATGGACCTGGAGGAATGGGTAAGTCAACTCTTGCAAGAGCTGTTTCAAATTTCATTGCTCATCAATTTGAATGTGTGTGTTTTCTTCACGATGTGAGAGAAAATTCAGCAAAACATGGTTTAGAGCATCAGCAAAAGGATTTTCTTTCCAAAACTGTTGGATGTGACATTAAAATAGGACATATTAGTGAGGGAATTCCAATCATAAGAAAAAGGCTACACCGGAAGAAGGTTTTATTGATTCTCGATGACATTGACGAATTGAAGCAGTTGCAGGCTTTGGCTGGAGGGCTTGATTGGTTTGGTGTTGGTAGTAGAGTAATCGTTACCACTCGAGACAAAAACTTGCTAGCAAGTCATGGCATTGAAGTAACATATGAAATAGATGTCTTAAATAAGGAAGAAGCTCTTGAATTGATTTTGTGGAAGGCTTTTAAAGGTAAGCAAGTTGATTTAAGTTATGCGCATGTTTTAAATCGTGAGGATGGCGATATGACATTACATGACTTGATAGAAGACATGGGTAAAGAAATTGTAAGACAAGAATCGAAAGAGCCAGAAAAACGTAGTAGGTTGTGGTTTAATGAANGTTATGCTTCTGGCTTTCCACTGGCGTTAGAAATATTAGGTTCCAACTTGTTTGGAAAGCATATAGAAGACTGGAATTCTTTGTTGGATCAATATGAAAAGATCCCTAATAAAGAGATTCAAGAGATACTTAAAGTGAGTTTTGATGCTTTGGAGGAAGATGAGCAGAGTGTTTTTCTTGACATTGCTTGTTGCTTTAAAGGTTATCATTTGAAAAATATGGAAGATATGCTTCGTGCTCATTATGGTCGATACATGAAATATCATATTGGAGTGTTGG 1546 0.3745 MLQSSSSYISYGFTYDVFLSFRGIDTRYGFIGNIYKALHEAGIHTFIDDKELHGGDEITPSLVKAIEESRIFIPVFSINYASSSFCLDELVHIIHCFKTKGCLVLPVFYDVEPTHVRHQTESYGEAITKHEKVFQNNKEKYNNNMERLHKWKMALNQAANLSGHYFNPRNGYEYEFIQEIVKYVSNKINRDPLDVVDYPVGLLDRVLKVNSLLEVGSNDEVKMLGIYGPGGMGKSTLARAVSNFIAHQFECVCFLHDVRENSAKHGLEHQQKDFLSKTVGCDIKIGHISEGIPIIRKRLHRKKVLLILDDIDELKQLQALAGGLDWFGVGSRVIVTTRDKNLLASHGIEVTYEIDVLNKEEALELILWKAFKGKQVDLSYAHVLNREDGDMTLHDLIEDMGKEIVRQESKEPEKRSRLWFNEXYASGFPLALEILGSNLFGKHIEDWNSLLDQYEKIPNKEIQEILKVSFDALEEDEQSVFLDIACCFKGYHLKNMEDMLRAHYGRYMKYHIGVL 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme5756g00001 515 Pfam TIR domain 15 189 IPR000157 GO:0007165
Trme5756g00001 515 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 185 484 IPR027417 -
Trme5756g00001 515 CDD AAA 226 339 - -
Trme5756g00001 515 FunFam Disease resistance protein (TIR-NBS-LRR class) 12 190 - -
Trme5756g00001 515 Gene3D - 10 192 IPR035897 -
Trme5756g00001 515 SMART till_3 14 161 IPR000157 GO:0007165
Trme5756g00001 515 PRINTS Disease resistance protein signature 425 439 - -
Trme5756g00001 515 PRINTS Disease resistance protein signature 223 238 - -
Trme5756g00001 515 PRINTS Disease resistance protein signature 298 312 - -
Trme5756g00001 515 Pfam NB-ARC domain 218 460 IPR002182 GO:0043531
Trme5756g00001 515 Gene3D - 193 350 IPR027417 -
Trme5756g00001 515 SMART AAA_5 220 360 IPR003593 GO:0016887
Trme5756g00001 515 ProSiteProfiles TIR domain profile. 13 188 IPR000157 GO:0007165
Trme5756g00001 515 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 424 500 IPR044974 GO:0006952
Trme5756g00001 515 SUPERFAMILY Toll/Interleukin receptor TIR domain 4 163 IPR035897 -
Trme5756g00001 515 Gene3D - 423 474 IPR042197 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme5756g00001 Trme-Chr5756 1 1850 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme5756g00001 200 514 WRKY Transcription Factor Family AT5G45050 27.812 1.81e-30 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme5756g00001 - - tpra:123910163 735.717