Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme575301g00001 ATGGGTAAAGCACCTTGTTGTGAGAAACATGGTGTTAGAAGAGGATCTTGGACTCCTGAAGAAGACCAAGCTTTAGTTGATTACATCAACAAACATGGCCATGGAAGTT 109 0.4128 MGKAPCCEKHGVRRGSWTPEEDQALVDYINKHGHGS 36
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme575301g00001 36 CDD SANT 16 35 IPR001005 -
Trme575301g00001 36 Gene3D - 7 36 - -
Trme575301g00001 36 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 36 - -
Trme575301g00001 36 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 36 IPR017930 -
Trme575301g00001 36 Pfam Myb-like DNA-binding domain 14 35 IPR001005 -
Trme575301g00001 36 SUPERFAMILY Homeodomain-like 8 35 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme575301g00001 Trme-Chr575301 1 109 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme575301g00001 1 36 MYB Transcription Factor Family AT1G34670 66.667 3.13e-16 67.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Trme575301g00001 Myb_DNA-binding 1.2e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme575301g00001 K09422 - gmx:100782075 81.6481