Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme57524g00001 ATCTTTCCTAACGAAGGCGACACTCATATCTTCACGGTTGTTGCTGGCACGATAGGATACCTCGACCCTGAGTACAATAAATTAAGCAGGTTGAAAGAAAAAAGTGATGTTTTCAGTTTTGGCGTAGTTTTGCTTGAGATAATTACAGGACAACCTGCCATAACCAAAACCGAAGAGAAAATCCATATTATTCAACAGGTTAGTTCTATGATGCTGGAAAGAGAGGTAAAAGATATCGTGGATCCCAGATTAAATGGAGAATTTGATATTTACTATGCAACTAAAGCTTTGGATATTGCAATGGCTTGTGTAGCAAAAACTTCAATCAATAGGCCAACCATGGCGCATGTAGTTATGGAACTTAAACAATGTTTGGAGAACAAGATCACCCATCTGTCTGACTCTAATTACACTTCTGAGAGTTTAACAGACACCTTAAATTCTGTATCCTTTGACAGAATTAGTGGCGAGAGCTCTTTAGCGAGGTAG 489 0.3865 IFPNEGDTHIFTVVAGTIGYLDPEYNKLSRLKEKSDVFSFGVVLLEIITGQPAITKTEEKIHIIQQVSSMMLEREVKDIVDPRLNGEFDIYYATKALDIAMACVAKTSINRPTMAHVVMELKQCLENKITHLSDSNYTSESLTDTLNSVSFDRISGESSLAR 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme57524g00001 162 Gene3D Transferase(Phosphotransferase) domain 1 2 149 - -
Trme57524g00001 162 SUPERFAMILY Protein kinase-like (PK-like) 8 130 IPR011009 -
Trme57524g00001 162 ProSiteProfiles Protein kinase domain profile. 1 125 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme57524g00001 162 Pfam Protein kinase domain 11 118 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme57524g00001 162 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 5 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme57524g00001 Trme-Chr57524 73 794 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme57524g00001 2 150 Receptor kinase-like Gene Family AT1G51860 52.318 6.47e-45 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Trme57524g00001 Pkinase 1.5e-10 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme57524g00001 - - psat:127087401 261.536