Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme57477g00001 ATGGAAAAGACAATTTTCATTTGTGTAATAGTGCTTGTGGGGTTGTTCACCTCAAAACTAAGGGTAGCCGCCTCAGCAAATTGGCAGCATGCTCATGCAACTTTCTATGGTGGAAGTGATGCCTCGGGAACTATGGGGGGTGCATGTGGATATGGAAATCTATACAAAGATGGTTATGGAATAAAAACAGCTGCATTGAGTACTGCTTTGTTTAATGATGGCAAATCATGTGGTGGTTGCTATGAGATTGTTTGTGATGCACGTCAAGTTCCCCAATGGTGCCTCAGAGGAACTTCCATAAAAATTACTGCCACTAATTTCTGTCCCCCAAACTTTGATCTCCCTAGTGACGATGGCGGTTGGTGTAATCCTCCTAGACCACATTTTGACATGTCTCAACCAGCTTTTCAAATGATCGCGAAATATAAAGCTGGAATTGTTCCAATCCTTTACAGAAA 458 0.4214 MEKTIFICVIVLVGLFTSKLRVAASANWQHAHATFYGGSDASGTMGGACGYGNLYKDGYGIKTAALSTALFNDGKSCGGCYEIVCDARQVPQWCLRGTSIKITATNFCPPNFDLPSDDGGWCNPPRPHFDMSQPAFQMIAKYKAGIVPILYR 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme57477g00001 152 PRINTS Expansin/Lol pI family signature 67 85 IPR007118 GO:0005576
Trme57477g00001 152 PRINTS Expansin/Lol pI family signature 27 42 IPR007118 GO:0005576
Trme57477g00001 152 PRINTS Expansin/Lol pI family signature 144 152 IPR007118 GO:0005576
Trme57477g00001 152 PRINTS Expansin/Lol pI family signature 45 63 IPR007118 GO:0005576
Trme57477g00001 152 PRINTS Expansin signature 87 98 IPR002963 GO:0009664
Trme57477g00001 152 PRINTS Expansin signature 119 136 IPR002963 GO:0009664
Trme57477g00001 152 PRINTS Expansin signature 58 72 IPR002963 GO:0009664
Trme57477g00001 152 PRINTS Expansin signature 100 110 IPR002963 GO:0009664
Trme57477g00001 152 PRINTS Expansin signature 136 149 IPR002963 GO:0009664
Trme57477g00001 152 Gene3D - 16 152 IPR036908 -
Trme57477g00001 152 CDD DPBB_EXPA_N 28 152 - -
Trme57477g00001 152 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 46 152 IPR007112 -
Trme57477g00001 152 FunFam Expansin 18 152 - -
Trme57477g00001 152 SMART dpbb_1 63 151 IPR007112 -
Trme57477g00001 152 Pfam Lytic transglycolase 63 151 IPR009009 -
Trme57477g00001 152 SUPERFAMILY Barwin-like endoglucanases 20 152 IPR036908 -
Trme57477g00001 152 PANTHER EXPANSIN-A15 10 152 IPR002963 GO:0009664
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme57477g00001 Trme-Chr57477 28 769 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme57477g00001 6 152 Expansin Gene Family AT4G01630 73.469 1.48e-79 234
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme57477g00001 - - gmx:100783801 276.944