Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme5746g00001 ATGTGGAGAACTATTTCCTTTCAGCTTGCATACACAATATTCAGTATAAGCAATCACCTTGAGCTGATTAAGCCAAATCCCAGAGATGACCCTGAGAAACAAGTTAAAGATGCAAAGTTTGCTGCTGCTGTCTATGGCCCAGACATTGACTTAGTTGGTGGGAGCATGCAGAATGAAAGTTTCCTGAGTCTAAGTGATACAAAACATTGTGGCAAAATGCGAGCACTTGAAAAGCTATTGTTGTCATGGTTTTCAAATGGAGACAAAGTTCTTTTGTTTAGCTATTCTGTAAGGATGTTGAACATACTGGAGAAATTTATCATACGAAAAGGCTACTGCTTCTCAAGACTTGATGGGTCCACTCCAACTAATTTACGTCAGTCTCTGGTGGATGATTTCAACTCTAGTCCAAGCAAACAAGTGTTCCTGATATCAACTCGTGCTGGTGGGCTTGGATTGAACCTGGTCAGTGCGAACCGTGTTGTAATATTTGATCCCAACTGGAATCCTTCACAAGACTTACAGGCTCAGGACAGGTCCTTTCGATTTGGACAGAAACGGCATGTTGTGGTATTCCGTCTTCTCTCAGCTGGTTCACTTGAAGAACTAATTTATTCTCGTCAGGTGTACAAGCAGCAGTTATCAAACATTGCTGTCTCTGGAAAGATGGAAAAACGATATTTTGAAGGTGTCCAGGATTGCAAAGAATTTAAAGGGGAGCTTTTTGGAATTTGCAATTTATTTCGAGATTTATCTGATAAACTATTTACCAGTGAGATCATTGAAATGCATGAGACGAGTAAAAAAGACGACGGGCTTAAAGCAGAACAACAGGAAAAAATAAATATTTCAGAAGAAACAAGTTTATTAGACACAGAGCCTGAAACCAGGTTATGTTCTGAAGCTGCGAGGACTACAACAAGTAAACCAGATATCGAATTTGAAGACCTTG 952 0.3981 MWRTISFQLAYTIFSISNHLELIKPNPRDDPEKQVKDAKFAAAVYGPDIDLVGGSMQNESFLSLSDTKHCGKMRALEKLLLSWFSNGDKVLLFSYSVRMLNILEKFIIRKGYCFSRLDGSTPTNLRQSLVDDFNSSPSKQVFLISTRAGGLGLNLVSANRVVIFDPNWNPSQDLQAQDRSFRFGQKRHVVVFRLLSAGSLEELIYSRQVYKQQLSNIAVSGKMEKRYFEGVQDCKEFKGELFGICNLFRDLSDKLFTSEIIEMHETSKKDDGLKAEQQEKINISEETSLLDTEPETRLCSEAARTTTSKPDIEFEDL 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme5746g00001 317 SMART helicmild6 101 184 IPR001650 -
Trme5746g00001 317 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 75 228 IPR001650 -
Trme5746g00001 317 MobiDBLite consensus disorder prediction 267 317 - -
Trme5746g00001 317 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 63 240 IPR027417 -
Trme5746g00001 317 PANTHER SNF2/RAD54 FAMILY MEMBER 16 290 - -
Trme5746g00001 317 CDD SF2_C_SNF 66 195 - -
Trme5746g00001 317 Gene3D - 5 303 IPR027417 -
Trme5746g00001 317 Pfam Helicase conserved C-terminal domain 72 184 IPR001650 -
Trme5746g00001 317 MobiDBLite consensus disorder prediction 267 281 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme5746g00001 Trme-Chr5746 305 1814 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme5746g00001 73 214 RAD5 or RAD16-like Gene Family AT5G43530 37.324 1.38e-23 99.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme5746g00001 K20098 - gmx:100781003 497.278