Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme5745g00001 ATGGATCTGAGCAACTCTAAAAATCTGAAGATGACTCCATGTTTTGAGGGAATCCTAAACCTGGAGCGGCTAGATTTTACAGGATGCATAAATTTGTTGCAGGTGCATCCATCAATTGGGCTTCTTTCCGAACTTGTATTCTTAAGTTTGCAGAAATGTAGTAGTCTAGTCCACCTTGATTTTGGCAGTGCAACAAGATTATGGTCTCTGAGAATTTTACGTCTCTCTGGTTGCACTAAACTTGAAAGAGCTCCAGATTTAACCGCAGCATTAAATCTTGAGTACCTCGATGTTGACCGATGCACACGTTTATCCTCATTTCGTGGATCTCTTATAAAGCTTAGAGTCTTAAGTTTGAGAGACTGCACAAATCTTGTTAGACTATCTGAAAGCCTTGATAAAATGACATCTCTTATAACTTTGGATCTATGCGGCTGCTTGAAATTTAAGTGTCTGCCTATTGATTCTGTTATGGAATCTTTGACTTTTCTGGACTTAAGCTTTTGCAATATTTCTGTAGTACCTGATGCTATTGGAGAATTAAGGGGTTTAGAGAGACTAAATTTACAGGGAAATAACTTCACTGTACTTCCTTCCAGCTTGAGTTGTCTTCACAATCTATCATATTTAAACTTGTCACATTGTCGTAGGCTTGAAAATTTGCCTTCGATCCCAACAAACAGTGGTCCATCAGATTCAGTGGGAAGATATTTTAAAACAACATCTGGATCTCGTGATCATAGATCTGGATTATATGTTTTTGACAGTCTTAAAATGGATGCATCCTTGTCTAGGGTGAGATCCCCTGTATACCTTCAATATAAATGGCTACAAAGACTACTTAAGGTGCGAACTCTGCCTACATTTCCCTCTTTCTCTATTCCTAATATATGTGTGTTTGGCGATGATACACTGTTGGAATTCAAGTGTGAGTGA 936 0.3825 MDLSNSKNLKMTPCFEGILNLERLDFTGCINLLQVHPSIGLLSELVFLSLQKCSSLVHLDFGSATRLWSLRILRLSGCTKLERAPDLTAALNLEYLDVDRCTRLSSFRGSLIKLRVLSLRDCTNLVRLSESLDKMTSLITLDLCGCLKFKCLPIDSVMESLTFLDLSFCNISVVPDAIGELRGLERLNLQGNNFTVLPSSLSCLHNLSYLNLSHCRRLENLPSIPTNSGPSDSVGRYFKTTSGSRDHRSGLYVFDSLKMDASLSRVRSPVYLQYKWLQRLLKVRTLPTFPSFSIPNICVFGDDTLLEFKCE 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme5745g00001 311 SMART LRR_typ_2 181 204 IPR003591 -
Trme5745g00001 311 SMART LRR_typ_2 158 179 IPR003591 -
Trme5745g00001 311 Gene3D Ribonuclease Inhibitor 1 89 IPR032675 -
Trme5745g00001 311 Gene3D Ribonuclease Inhibitor 90 155 IPR032675 -
Trme5745g00001 311 Gene3D Ribonuclease Inhibitor 156 258 IPR032675 -
Trme5745g00001 311 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 57 159 223 - -
Trme5745g00001 311 Pfam Leucine rich repeat 160 216 IPR001611 GO:0005515
Trme5745g00001 311 SUPERFAMILY L domain-like 8 223 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme5745g00001 Trme-Chr5745 546 1481 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme5745g00001 67 222 WRKY Transcription Factor Family AT4G12020 33.750 1.14e-11 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme5745g00001 - - vvo:131650412 343.969