Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme57419g00001 TCATTCCCAAATAAGTGGATACTAAACCATCTTTCTCCATCATCTCAAGACGTGATATTGCGCATGGGTAAGAATGAATGGCTTGGGAAATACTTGTATCATAATATTCGTAACAATGGAGGACTTACTGGTGGGTGGAAATATTTTGCCCTCGACAATAACCTTGAAGAGTTCGATGTGTGTTTGTTTAAACCAGCTGGTCATATGCATGACTTATTGATCTTAGAAATGAGCATTTTTAGAGTCGTTGAGGAGATTACTCCTCTTACTGCGGTGAATTCTCCAGGAAAGAAGAGGGGAGTTAAGAGAACCCCGCCTGGAAAGAAGAGGGGAGTGAAGAGAACACTGACCAATGGTGTCCAAACAGAACTCGAGTCCATTGAAGGCGTGTAA 393 0.4198 SFPNKWILNHLSPSSQDVILRMGKNEWLGKYLYHNIRNNGGLTGGWKYFALDNNLEEFDVCLFKPAGHMHDLLILEMSIFRVVEEITPLTAVNSPGKKRGVKRTPPGKKRGVKRTLTNGVQTELESIEGV 130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme57419g00001 130 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 1 86 IPR044837 -
Trme57419g00001 130 MobiDBLite consensus disorder prediction 92 113 - -
Trme57419g00001 130 Gene3D - 1 86 IPR015300 -
Trme57419g00001 130 Pfam B3 DNA binding domain 2 68 IPR003340 GO:0003677
Trme57419g00001 130 CDD B3_DNA 1 81 IPR003340 GO:0003677
Trme57419g00001 130 ProSiteProfiles B3 DNA-binding domain profile. 1 83 IPR003340 GO:0003677
Trme57419g00001 130 SUPERFAMILY DNA-binding pseudobarrel domain 2 71 IPR015300 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme57419g00001 1 81 REM Transcription Factor Family AT4G33280 37.037 1.73e-14 66.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trme57419g00001 B3 2.7e-07 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme57419g00001 - - tpra:123885991 257.684