Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme57261g00001 ACAATACGGGAAAATATTTTGTTTGGATCCGAGTTCGATGATCAAAGATATCAGGAAACACTTCAAAGGTCTTCACTGATAAAGGACCTTGAGTCGCTTCCCTACGGTGACCGCACCGAAATAGGTGAGAGAGGAGTTAATTTAAGTGGAGGTCAAAAACAGCGAATTCAACTTGCTCGAGCTCTTTATGAGAATGCTGATTTATATCTCTTGGACGATCCATTTAGTGCTGTTGACGCACATACTGCAAAAAGTTTGTTTAATGAATACATCATGGAAGGACTCAAAGGGAAAACTGTCTTACTCGTGACTCATCAAGTTGACTTTCTCCCAGCATTTGATACTGTTTTGTTAATGTCAGACGGTGTAATCCTACAAGCTGGTCCGTATCACCACCTAATGACCGAAAGCAAAGAATTCCAAGACCTTGTCAATGCTCACAAGGTTACCGCTGGTTCAAACCAGCTTCTGAATTCTACGTTTTCTCAAGCTTCTAGAAATA 502 0.4084 TIRENILFGSEFDDQRYQETLQRSSLIKDLESLPYGDRTEIGERGVNLSGGQKQRIQLARALYENADLYLLDDPFSAVDAHTAKSLFNEYIMEGLKGKTVLLVTHQVDFLPAFDTVLLMSDGVILQAGPYHHLMTESKEFQDLVNAHKVTAGSNQLLNSTFSQASRN 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme57261g00001 167 Gene3D - 1 164 IPR027417 -
Trme57261g00001 167 Pfam ABC transporter 26 75 IPR003439 GO:0005524
Trme57261g00001 167 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 1 153 - -
Trme57261g00001 167 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 146 IPR027417 -
Trme57261g00001 167 ProSitePatterns ABC transporters family signature. 48 62 IPR017871 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme57261g00001 Trme-Chr57261 61 903 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme57261g00001 1 167 Calmodulin-binding Proteins AT2G36910 35.393 2.59e-20 85.1