Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme572574g00001 GGAGTCACATATCTAGTAACTCACAAAACCACCAAAGAACAATTCGCCTGCAAATCCATCGCCACCAGGAAGCTCGTTCGTCGCGATGATTTGGATGATATTCGCCGTGAAGTTCAGATCATGTACCATCTCACCGGTCACAGGAATATTGTTGAGCTTAAAGGTGCTTATGAGGATCGTCATTCAGTTAACCTCATCATGGAGCTTTGTGCCGGAGGTGAACTCTTTGATCGGATTATATCTAAAGGTCATTACTCCGAGCGTGCTGC 269 0.4572 GVTYLVTHKTTKEQFACKSIATRKLVRRDDLDDIRREVQIMYHLTGHRNIVELKGAYEDRHSVNLIMELCAGGELFDRIISKGHYSERAA 90
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme572574g00001 90 FunFam Calcium-dependent protein kinase 1 1 74 - -
Trme572574g00001 90 SUPERFAMILY Protein kinase-like (PK-like) 1 89 IPR011009 -
Trme572574g00001 90 ProSiteProfiles Protein kinase domain profile. 1 90 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme572574g00001 90 Pfam Protein kinase domain 1 89 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme572574g00001 90 Gene3D Phosphorylase Kinase; domain 1 1 78 - -
Trme572574g00001 90 PANTHER SERINE/THREONINE-PROTEIN KINASE 1 90 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme572574g00001 Trme-Chr572574 1 269 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme572574g00001 1 90 EF-hand Containing Proteins AT4G23650 83.333 1.38e-48 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Trme572574g00001 Pkinase 1.1e-16 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme572574g00001 K13412 - gmx:100777096 167.162