Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme57183g00001 ATGATTCAATTGAAGCTTGCTGGAGTTTTAGTATTCTCAGCGATTCCATTCACTGCCGTCAAAGCTATAGCTAATAGTCCGCTAGGGGAGTCGCTTCAGAGGAAAATGGAAGAGACAAARAAATTTGCTATACAAAACTCCTCTAAATTCAAGGCTGAGGCTCACAAGGCCAGGAAACAGAGCATTTGGTATGGAGAAGGTCGGCCTCGTTGGCTCGGTCCTATTTCATATGGCTACCCATCATATCTCACTGGAGAACTTCCCGGTGATTATGGCTTTGACATTGCTGCCCTTGCCAAGGATCCTGTGGCATTGGACAAATATTTCAACTTTGAGATATTGCATGCTCGCTGGGCTATGCTTGCATCTGTTGGTGCTCTCATTCCTGAGTTGTTAGACCTATTGGGAGCCTTTCACTTCGTAGAACCTGTTTGGTGGCGGGTTGGTTATTCGAAGCTCCAG 462 0.4589 MIQLKLAGVLVFSAIPFTAVKAIANSPLGESLQRKMEETKKFAIQNSSKFKAEAHKARKQSIWYGEGRPRWLGPISYGYPSYLTGELPGDYGFDIAALAKDPVALDKYFNFEILHARWAMLASVGALIPELLDLLGAFHFVEPVWWRVGYSKLQ 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme57183g00001 154 Gene3D Chlorophyll a/b binding protein domain 70 154 - -
Trme57183g00001 154 Pfam Chlorophyll A-B binding protein 80 148 IPR022796 -
Trme57183g00001 154 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 40 152 IPR001344 GO:0009765|GO:0016020
Trme57183g00001 154 SUPERFAMILY Chlorophyll a-b binding protein 62 151 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme57183g00001 Trme-Chr57183 101 808 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme57183g00001 5 154 Chloroplast and Mitochondria Gene Families AT1G76570 74.667 6.79e-81 240
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme57183g00001 K14172 - gmx:100786260 272.707