Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme5706g00001 ATGGATGTTCATGTGATAACTATTGGAGAAGGAAGTGGAGCTATGGAAAATAACGGGCATGTTGAACTTGGTGAAGTAAATGATGTTGGAAACTCTGGATCTCATGCTGAGGATGTGGTTTCTGAGCCGTATTTGGGTATGGTATTTGATTCTGAAGACTCTGCCAAAACTTTTTATAGTGAGTATGCTAAACGCTCGGGTTTCAGCTCTAAAGCTGGCTTGCATGGTCAGTTTAATGCTGATGGGACAAATATGTTTCGGGAGTTCGTGTGTAGCATGGAAGGTTTGAAAAGAAGGATGACTGAAAGTTGTGGGGCAATGCTTAGGATAGAGCAAAAGGGTCAAAATAAGTGGGTTGTTACAAAATTTGTGAGGGGACATAGTCATGCCACGGCGGTTCCTGATAAGGTGGAAAAACTTCGACCACAGAAACACTTTTCTAGTGTTGGGAGAACCATGCCTGAAACTTACAAAGGAGTGGGGCTTGTTCCAACTGGTGTCATGTATATATCTATTGATGGGCATCATGTTTCCTCCGAGAATAGTCACAAGATTAGGAACTTCCCTGCAGTTGCTGGTGGTAAAACGAGTCATCCAGTTAAAAATACCACATCGACGACTTATACTGTTAGGAAACCTATTCAAAAGAAGACATTAGGGAGGGATGCTCCGAATCTGCTGGAGTATTTTAAGAAAGTGCAAGCTGAAAACCCTGGCTTCTTCTATGCAATACAACTTGATGAAGATAATCGTATGTCTAATGTGTTTTGGGCAGATGCAAGATCAAGGACAGCTTACAGTCATTTTGGTGATGCAGTTACCCTGGACACAACACATAGAGCAAATCAATATAATGTGCCATATGCTCCATTCACTGGGATAAACCATCATGGTCAGATGATTTTGTTTGGTTGTGCACTCCTTTTTGATGATTCTGAAGCTTCTTTTAGTTGGCTCTTCAAGACATTTCTAGCAGCAATGAACGACCATCACCCTATCTCTATAACTACCGATCAGGACAGATCCATACAAAAAGCAGTTTCAAAAGTTTTTCCTCAAGCACGGCACTGTATAAACAAGCGTTATGTCTTGCGAGAAGGCCACGAAAAGTTGGGCCATGTATGTCGCATGCATCCATATTTTCACTATGAACTTTATAATTGTATTAATTTGACAGAAACAATTGAGGAGTTTGATTTTTCTTGGAATTCTATCATTGATAAATATGAACTCAGAGGGCATGATTGGCTTCGGTCCTTGTATAGTGCTCGTGATCAGTGGGTTCCAGCATATTTCCGTGATTCATTTTTCGCTGTACTATCTCCTAATCAAGGATTTGAANNNNNNNNNNANNNNNNNNNNANNNNCCGGCATACAACATTACCAATGTTCTTTAGGCAGTATGAACTAGCTTTGGAGAGATGGTTTGAAAAGGAAATAGAATCAGATTTTGAGACAATTAGCACTACACCAGTTCTAAAGACACCTTCGCCCATGGAGAATCAGGTTGCTAAGCTTTATACACAGAAAATATTTTTGAAGTTTCAAGAAGAGCTAGTGGAAACTTTTGCTTATACTGCCAACAGAATCGAAGAGGATGGGGAAAATAGCATATTTAGGGCATTCTTTGTAGGCATGTTCTAA 1644 0.396 MDVHVITIGEGSGAMENNGHVELGEVNDVGNSGSHAEDVVSEPYLGMVFDSEDSAKTFYSEYAKRSGFSSKAGLHGQFNADGTNMFREFVCSMEGLKRRMTESCGAMLRIEQKGQNKWVVTKFVRGHSHATAVPDKVEKLRPQKHFSSVGRTMPETYKGVGLVPTGVMYISIDGHHVSSENSHKIRNFPAVAGGKTSHPVKNTTSTTYTVRKPIQKKTLGRDAPNLLEYFKKVQAENPGFFYAIQLDEDNRMSNVFWADARSRTAYSHFGDAVTLDTTHRANQYNVPYAPFTGINHHGQMILFGCALLFDDSEASFSWLFKTFLAAMNDHHPISITTDQDRSIQKAVSKVFPQARHCINKRYVLREGHEKLGHVCRMHPYFHYELYNCINLTETIEEFDFSWNSIIDKYELRGHDWLRSLYSARDQWVPAYFRDSFFAVLSPNQGFEXXXXXXXXXRHTTLPMFFRQYELALERWFEKEIESDFETISTTPVLKTPSPMENQVAKLYTQKIFLKFQEELVETFAYTANRIEEDGENSIFRAFFVGMF 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme5706g00001 547 Pfam FAR1 DNA-binding domain 57 130 IPR004330 -
Trme5706g00001 547 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 34 533 IPR031052 GO:0006355
Trme5706g00001 547 Pfam MULE transposase domain 273 358 IPR018289 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme5706g00001 Trme-Chr5706 240 1980 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Trme5706g00001 MULE 2.9e-20 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme5706g00001 - - gmx:100786206 778.089