Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme57037g00001 ATGACGACGGCTATCACGGCGGCGGAACCCGACCTAAAAACATACTGGTGCCACGAATGCGACATGAGCGTCTCTCTAACTTCTTCCTCAACTCCCTCACCTCTCCTCTGTCCTCATTGTCACACTCACTTCCTCGAACTCATGGACTCACCTTTCTCCCAAAACGACGCCGAATCAACTTCTTCCCTATTCGACGTCGTTTTCCAAGACGCACTTTTACTACTCACACCCCCTCCAACCAAACCACGCACCGAAATACTAATCCCTATTATAACCGTCACACAAACTCTTCTTACACTTCTCGATCCAAACGGTGTCGTTTTATGTGCGGTTTGTAAAGAAGCGATTTATGTTGATGAAGAAGCGAAACAGCTTCCTTGTGATCATCTTTATCATTCTGATTGTATTACTCCGTGGCTTCTTCTTCGATCTTCTTGTCCTCTTTGTCGGTTCCGAATCTCGGAACACGAAGAGGATGAGAATGATGAAGAGGATGAAGATGATGAGGATGATGTTGTTGGTGGTGCTGATGTGATGAGGCAGATGGTTTT 551 0.461 MTTAITAAEPDLKTYWCHECDMSVSLTSSSTPSPLLCPHCHTHFLELMDSPFSQNDAESTSSLFDVVFQDALLLLTPPPTKPRTEILIPIITVTQTLLTLLDPNGVVLCAVCKEAIYVDEEAKQLPCDHLYHSDCITPWLLLRSSCPLCRFRISEHEEDENDEEDEDDEDDVVGGADVMRQMV 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme57037g00001 183 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 61 152 - -
Trme57037g00001 183 MobiDBLite consensus disorder prediction 158 173 - -
Trme57037g00001 183 SMART ring_2 109 149 IPR001841 -
Trme57037g00001 183 Pfam zinc-ribbon 14 48 IPR039525 GO:0061630
Trme57037g00001 183 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 103 168 IPR013083 -
Trme57037g00001 183 ProSiteProfiles Zinc finger RING-type profile. 109 150 IPR001841 -
Trme57037g00001 183 MobiDBLite consensus disorder prediction 156 183 - -
Trme57037g00001 183 Pfam Ring finger domain 109 150 IPR001841 -
Trme57037g00001 183 SUPERFAMILY RING/U-box 104 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme57037g00001 Trme-Chr57037 354 904 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme57037g00001 8 70 C3H Transcription Factor Family AT3G60080 49.254 1.30e-09 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme57037g00001 K11982 - gmx:100782164 191.815