Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme56975g00001 ATGAAAATCTTAACCGAACGTGGATACTCTTTTACCACTTCAGCCGAGCGTGAAATCGTGAGGGACGTGAAGGAAAAACTAGCCTACATTGCTCTTGATTATGAACAAGAGCTAGAAACCTCAAAGACAAGCTCGGCTGTTGAGAAGAGCTATGAGTTACCTGATGGACAGGTAATCACAATAGGCGCTGAAAGGTTCCGTTGTCCTGAAGTACTTTTCCAGCCGTCGATGATTGGTATGGAAGCTGCTGGTATACATGAAACAACATACAATTCAATCATGAAGTGTGATGTTGATATCAGGAAGGATTTGTATGGAAACATTGTGCTGAGTGGTGGTACGACTATGTTCCCCGGCATTGCTGACCGGATGAGCAAAGAGATATCAGCATTGGCACCAAGTAGCATGAAAATTAAGGTCGTTGCACCGCCAGAGAGGAAGTACAGTGTCTGGATTGGAGGCTCCATTTTGGCATCTCTCAGCACCTTCCAACAGATGTGGATTGCAAAGGCAGAATATGATGAATCAGGTCCTTCAATTGTTCACAGGAAATGCTTCTAA 561 0.4421 MKILTERGYSFTTSAEREIVRDVKEKLAYIALDYEQELETSKTSSAVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGTTMFPGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme56975g00001 186 FunFam Major actin 67 149 - -
Trme56975g00001 186 FunFam Actin, muscle 1 82 - -
Trme56975g00001 186 Gene3D Actin; Chain A, domain 4 1 85 - -
Trme56975g00001 186 SMART actin_3 1 186 IPR004000 -
Trme56975g00001 186 ProSitePatterns Actins signature 2. 167 175 IPR004001 -
Trme56975g00001 186 Pfam Actin 6 186 IPR004000 -
Trme56975g00001 186 FunFam Putative actin-related protein 5 150 178 - -
Trme56975g00001 186 SUPERFAMILY Actin-like ATPase domain 1 186 IPR043129 -
Trme56975g00001 186 PANTHER ACTIN 1 179 IPR004000 -
Trme56975g00001 186 Gene3D - 108 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme56975g00001 Trme-Chr56975 111 860 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme56975g00001 1 186 Cytoskeleton Gene Families AT3G12110 95.699 1.38e-132 374
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme56975g00001 K10355 - han:110872585 367.466