Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme56958g00001 GGTTCATCAATTGGACATGTCAATGCAGCACAACCAGCATGCAGCACTGCAGCATCTGCAGATTCCATATTGAGTACTAAAACCGAACCGAATCTTTGTATTACGGCAAAACAATCTCAATCAAGCCTTTCTTTTTCTGGTATTAATGAAGACGGTGGTGGTGGAGACTATCAAGATTGTGGAGCTTCTTCAATGCTTCTCATGGGAGAACCTCCTTGGTTAAATACTTGTCCCGAAAATGAGCTACAACTACAATCTGCTAATCGCTGTAGTGCTGTTATGCGATACAAGGAAAAGAAGAAGACTCGCAAGTTCGACAAAAGAGTGAGGTATGCCTCTCGCAAGGAAAGAGCTGACGTCCGAAGACGTGTGAAAGGCCGGTTTGTCAAAGCTGGCGAGGCCTACGATTATGACCCTTTGAGCCAAACCAGAAGCTATTGA 441 0.4467 GSSIGHVNAAQPACSTAASADSILSTKTEPNLCITAKQSQSSLSFSGINEDGGGGDYQDCGASSMLLMGEPPWLNTCPENELQLQSANRCSAVMRYKEKKKTRKFDKRVRYASRKERADVRRRVKGRFVKAGEAYDYDPLSQTRSY 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme56958g00001 146 ProSiteProfiles CCT domain profile. 89 131 IPR010402 GO:0005515
Trme56958g00001 146 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 10 134 - -
Trme56958g00001 146 Pfam CCT motif 89 131 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme56958g00001 Trme-Chr56958 138 899 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme56958g00001 8 146 C2C2-CO-like Transcription Factor Family AT3G07650 62.411 8.06e-53 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Trme56958g00001 CCT 1.4e-16 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme56958g00001 - - gmx:100800832 224.172