Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme56953g00001 ATGAAGAAACGGCGAGGTGCTCCAACGGGGAGAAGTGGATACCAAATATTCCTCAAGCAAGAATGTGCTCGATTAAAAGCTTGTTGCCAGGACATAGATGGGAAAACAATCCTACGCACAGCTGTCGAAGCATGGAACAAGATGTCTGACAATGATAAACAGCCATATGTGGAAGAAAGCAAGAAGATAAAGGAACAAAATAAGGAAGCAAAAATGATCATCGACAATAAGCAGAAGGAACAAAATAAGGAAGCAATGACCATTGACAATAAGAAGAAGAAGAAGAGCACTCAAGATCTTAAAAGGGATGAAAAGAAGCCTAATGTGTCGTCTGGTGACAACTACTGTGTAACTTCGCAACCTCTACCAAATCACGCTTTTGTCAACAATGCAGCAATTGACTTAGCTCTTAAAATGACAGAAAAAACATCCAAGGAACCCTTCTCCCCGGTTGATTTGGTTACTTATCGTTCCGTAGATTTGCAATATGGGGAATTTAT 500 0.402 MKKRRGAPTGRSGYQIFLKQECARLKACCQDIDGKTILRTAVEAWNKMSDNDKQPYVEESKKIKEQNKEAKMIIDNKQKEQNKEAMTIDNKKKKKSTQDLKRDEKKPNVSSGDNYCVTSQPLPNHAFVNNAAIDLALKMTEKTSKEPFSPVDLVTYRSVDLQYGEF 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme56953g00001 166 SMART hmgende2 7 76 IPR009071 -
Trme56953g00001 166 CDD HMG-box_SF 11 66 - -
Trme56953g00001 166 Coils Coil 60 83 - -
Trme56953g00001 166 SUPERFAMILY HMG-box 8 69 IPR036910 -
Trme56953g00001 166 Gene3D High mobility group box domain 6 108 IPR036910 -
Trme56953g00001 166 Pfam HMG (high mobility group) box 11 70 IPR009071 -
Trme56953g00001 166 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 5 120 - -
Trme56953g00001 166 MobiDBLite consensus disorder prediction 48 116 - -
Trme56953g00001 166 MobiDBLite consensus disorder prediction 52 109 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Trme56953g00001 HMG_box 3.3e-08 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme56953g00001 - - mtr:120577736 197.208