Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme56923g00001 AACAATCTTCATGAGCTCTGGTCTCTTCTCAACTTTCTTCTGCCTGAAATTTTTAGTTCTGCTGAAACGTTTGATGAATGGTTTCAAATCTCCGGTGAAAATGACCAACAGGAGGTCCTCCGTCCATTTCTTCTTCGAAGATTGAAATCAGATGTGGAGAAAGGGTTGCCACCGAAAAAGGAAACCATTCTCAAAGTAGGCATGTCCCAAATGCAGAAACAATATTATAAGGCGTTACTGCAGAAGGATCTTGAGGTTGTGAATGCTGGTGGAGAACGGAAACGTCTCCTAAATATAGCAATGCAACTTCGTAAATGTTGCAATCATCCATATCTTTTCCAAGGGGCTGAACCTGGTCCTCCCTACACAACAGGGGATCATCTCATTACAAATGCTGGTAAATTTTCTTTACATTAA 417 0.4101 NNLHELWSLLNFLLPEIFSSAETFDEWFQISGENDQQEVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQMQKQYYKALLQKDLEVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGDHLITNAGKFSLH 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme56923g00001 138 Gene3D - 1 48 IPR038718 -
Trme56923g00001 138 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 49 122 IPR027417 -
Trme56923g00001 138 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 1 137 - -
Trme56923g00001 138 Gene3D - 53 138 IPR027417 -
Trme56923g00001 138 Pfam SNF2-related domain 1 113 IPR000330 GO:0005524|GO:0140658
Trme56923g00001 138 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 57 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme56923g00001 Trme-Chr56923 193 725 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme56923g00001 1 128 RAD5 or RAD16-like Gene Family AT5G43530 27.703 7.31e-11 57.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Trme56923g00001 SNF2_N 2.3e-22 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme56923g00001 K11654 - csav:115723339 271.552