Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme5691g00001 GATAATCTATCTTTTCCACTAATATGTCCAGATTGGAGTGCAGATGAAGAGATGTTACTTCTTGAGGCCATTGACATGTATGGATTTGGAAATTGGAATGATGTTGCAGACAATGTTGGAACGAAAAGCAAATCTCAGTGTATTGACCACTATAACGCAGTATATCTGAATTCACCATGTTTTCCTGTACCTGATTTGTCTCTTGTGAAGGGAAAGAACAAAGAGGAACTTCTTGCCATGGCAAAGGGACATCAAGTCAAGAAAGGTAGTTATGTTATGTCTCCGGTCCGGATAATATCTTCTCTTTGA 309 0.3883 DNLSFPLICPDWSADEEMLLLEAIDMYGFGNWNDVADNVGTKSKSQCIDHYNAVYLNSPCFPVPDLSLVKGKNKEELLAMAKGHQVKKGSYVMSPVRIISSL 102
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme5691g00001 102 CDD SANT 12 52 IPR001005 -
Trme5691g00001 102 SMART sant 8 57 IPR001005 -
Trme5691g00001 102 SUPERFAMILY Homeodomain-like 4 58 IPR009057 -
Trme5691g00001 102 Pfam Myb-like DNA-binding domain 11 52 IPR001005 -
Trme5691g00001 102 ProSiteProfiles SANT domain profile. 7 59 IPR017884 -
Trme5691g00001 102 PANTHER TRANSCRIPTIONAL ADAPTOR 2 ADA2 -RELATED 1 87 - -
Trme5691g00001 102 FunFam Transcriptional adapter 2 5 57 - -
Trme5691g00001 102 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 12 59 IPR017930 -
Trme5691g00001 102 Gene3D - 6 57 - -
Trme5691g00001 102 ProSiteProfiles Myb-like domain profile. 12 55 IPR001005 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme5691g00001 1 87 EF-hand Containing Proteins AT3G07740 63.218 1.12e-36 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Trme5691g00001 Myb_DNA-binding 5.8e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme5691g00001 K11314 - gmx:100779424 162.925