Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme56845g00001 GTTAGGTTGAGAGGTCATAAGCTTGCTCAAGTTAATCTTTTTCAGAAACCGATTGTTAAGGTTAAGCTTGGTGATTTGATGGCTGCTACGAATAATTTTAGATCGGAGAATGTTCTTATTACGACTAGGACTGGGGCTACTTATAGGGCGGATTTACCGGATGGTTCGACGCTCGCGGTGAAGAGGTTGAGTAGTTGTAAGATTGGTGAGAAGCAGTTTCGGATGGAGATGAATCGGTTGGAACAGGTTAGGCATCCGAATTTGGCTCCTTTGTTGGGGTATTGTGTTGTGGAAGAGGAGAAGCTTTTGGTTTATAAGCATATGTCGAATGGGACGCTTTTTTCGCTGTTGCATAAGAATAGTGGTGCGTTGGATTGGTTGATGAGGTTTAGGATAGGGTTGGGTGCGGCTAGGGGACTTGCGTGGTTGCATCATGGTTGTCATCCTCCGATTATACAACAGAATATTTGTTCTAATGTGATTCTTGTGGATGAAGAATTTGATGCTCGGATAATGGACTTTGGACTCGCCAGGCTTATGACGTCTGATGCCAATGGTAGTTTTGTGAACGGCGATTTGGGGGAACTTGGTTATATAGCTCCTGAGTATTCAAGTACGATGGTTGCTTCGTTGAAAGGGGATGTGTATGGATTCGGTGTTTTGCTTTTGGAGTTGGTCACCGGGTACAAACCTCTCGAGGTGAACCACGGCGATGAAGAGTTTAAGGGTAACTTGGTGGATTGGGTTAATGTGCATTCTAGTTCAGGTAGACTCAAGGATTGCATCGATAAGGCGATCAGTGGAAAAGGTAACGATGAGGAGATTCTGCAGTTTCTGAAAATCGCATCGAATTGTGTGATTACTCGCCCGAAAGATAG 878 0.4442 VRLRGHKLAQVNLFQKPIVKVKLGDLMAATNNFRSENVLITTRTGATYRADLPDGSTLAVKRLSSCKIGEKQFRMEMNRLEQVRHPNLAPLLGYCVVEEEKLLVYKHMSNGTLFSLLHKNSGALDWLMRFRIGLGAARGLAWLHHGCHPPIIQQNICSNVILVDEEFDARIMDFGLARLMTSDANGSFVNGDLGELGYIAPEYSSTMVASLKGDVYGFGVLLLELVTGYKPLEVNHGDEEFKGNLVDWVNVHSSSGRLKDCIDKAISGKGNDEEILQFLKIASNCVITRPKD 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme56845g00001 292 Gene3D Phosphorylase Kinase; domain 1 1 107 - -
Trme56845g00001 292 SUPERFAMILY Protein kinase-like (PK-like) 13 289 IPR011009 -
Trme56845g00001 292 Pfam Protein tyrosine and serine/threonine kinase 55 233 IPR001245 GO:0004672|GO:0006468
Trme56845g00001 292 Gene3D Transferase(Phosphotransferase) domain 1 108 292 - -
Trme56845g00001 292 ProSiteProfiles Protein kinase domain profile. 33 292 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme56845g00001 292 FunFam Inactive LRR receptor-like serine/threonine-protein kinase BIR2 1 107 - -
Trme56845g00001 292 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 16 291 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme56845g00001 Trme-Chr56845 1 878 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme56845g00001 3 292 Receptor kinase-like Gene Family AT1G27190 69.831 1.47e-146 422
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xa Trme56845g00001 PK_Tyr_Ser-Thr 6.8e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme56845g00001 - - gmx:100810378 518.85