Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme5681g00001 ATGAATCTCGATGGAGAAACAAATCTTAAACTCAAACAAGCACTTGAAGAAACTTCCAAATTTCAAGAAGACTCCACCTTTCGAAATTTCAAAGCAATCATTAAATGTGAAGATCCAAATGCATATCTATACTCTTTCATAGGAAACATTGAGCTTGAAGATCAACTATATCCGCTTTCGCCTCAGCAGTTACTGCTTAGGGACTCAAAGCTTAGGAACACTGATTTTATATACGGCGTAGTTATCTTTACCGGCCATGATACAAAAGTTATGCAGAATTCGACTGACCCTCCATCTAAGAGAAGCAAAGTCGAGAAGCGAATGGATAAGATAATCTACTTTCTCTTCTCAGTTTTGTTTTTTATTTCTTTTATTGGTTCAATTTTCTTCGGCATTGCAACAAGTGAGGATCTTGAAAATGGAGTAATGAAGAGATGGTACCTCAGGCCAGATGATACTACGATCTACTACAATCCGAAGAAAGCACCGATTGCGGCAATGCTCCATTTCTTGACTGCACTAATGTTGTATAGTTACTTGATTCCAATTTCTTTGTATGTCTCCATTGAAATTGTGAAAGTCCTTCAAAGCATCTTCGTCAACCACGATGTACACATGTATTACGAGGAAACTGACCAGCCTGCACGCGCTCGTACCTCAAATTTGAACGAAGAACTTGGTCAAGTTGATACTATTCTTTCGGATAAAACAGGAACTTTGACTTGTAATTCTATGGAATTCGTCAAGTGTTCAATTGCTGGGATCGCCTACGGACGAGGTGCTACAGAAGTTGAGAGAGCTCTAGCGAGGAGAAAAGACTTAGATGGCAATGTTGCGGAGATTTCTGAAGCAAAGTCATCCATTAAAGGTTTTAACTTCATGGATGAAAGGATTATGAATGGAAATTGGGTCAAGGAACCTCACGCCAATGTAATCCAGAACTTCATGCGTTTGTTGGCAGTATGCCATACTGCAATACCTGAAGTTGATGAAGAAACCGGCAACGTTTCTTATGAAGCCGAGTCACCGGATGAGGCAGCTTTTGTAATTGCAGCTAAACAACTTGGATTTGAGTTTTATGAAAGGACCCAGACAACTATTTCCCTGCGCGAGTTCAATTCCATAACAGGCAGGACTATTAGAAGGTCCTACAAGCTTTTGAATATATTAGAGTTTAGTAGTGCAAGAAAAAGAATGTCTGTTATTGTAAGAGATGAGGAGGGGAAACTGCTACTTCTTAGCAAAGGGGCTGACAGGGAGTTTGAAGAAAAGACTAAGCAGCACATTAATGAATATGCTGATGCTGGTTTGAGGACCTTGATACTTGCCTATCGCGAACTTGATGAAGAAGAGTACGATCTTTTCAATAAAGAATTGATGGAAGCCAAGAGCTTAGTAAGTGCGGATCGGGAGCAGATTGTGGAGGAAGTATTAGAAAAGATTGAAAAGGATTTAATTCTTCTTGGTGCTACTGCAGTTGAAGACAAACTTCAAATTGGG 1500 0.3973 MNLDGETNLKLKQALEETSKFQEDSTFRNFKAIIKCEDPNAYLYSFIGNIELEDQLYPLSPQQLLLRDSKLRNTDFIYGVVIFTGHDTKVMQNSTDPPSKRSKVEKRMDKIIYFLFSVLFFISFIGSIFFGIATSEDLENGVMKRWYLRPDDTTIYYNPKKAPIAAMLHFLTALMLYSYLIPISLYVSIEIVKVLQSIFVNHDVHMYYEETDQPARARTSNLNEELGQVDTILSDKTGTLTCNSMEFVKCSIAGIAYGRGATEVERALARRKDLDGNVAEISEAKSSIKGFNFMDERIMNGNWVKEPHANVIQNFMRLLAVCHTAIPEVDEETGNVSYEAESPDEAAFVIAAKQLGFEFYERTQTTISLREFNSITGRTIRRSYKLLNILEFSSARKRMSVIVRDEEGKLLLLSKGADREFEEKTKQHINEYADAGLRTLILAYRELDEEEYDLFNKELMEAKSLVSADREQIVEEVLEKIEKDLILLGATAVEDKLQIG 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme5681g00001 500 NCBIfam phospholipid-translocating P-type ATPase 1 499 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016020|GO:0140326
Trme5681g00001 500 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 298 490 IPR023299 GO:0000166
Trme5681g00001 500 Gene3D - 264 495 IPR023299 GO:0000166
Trme5681g00001 500 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 1 498 - -
Trme5681g00001 500 SUPERFAMILY Calcium ATPase, transmembrane domain M 95 227 IPR023298 -
Trme5681g00001 500 ProSitePatterns E1-E2 ATPases phosphorylation site. 235 241 IPR018303 -
Trme5681g00001 500 Pfam Cation transport ATPase (P-type) 322 418 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme5681g00001 Trme-Chr5681 65 2000 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme5681g00001 1 500 Primary Pumps ATPases AT1G68710 70.038 0.0 772
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme5681g00001 K01530 - gmx:100797039 819.69