Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme5680g00001 ATCAGAGCCATTTCCGTAACACCGCCGGAACTTCTTTTCTGCAATCTCGTCGGTGAACGCCGTTCAGGCAAGTTTACCTCTTCCGCTATCGTTTACCTCTCTCTCATCAATTTTCTTTGCCACCTTAACTCTCTCGCCGGAACTCTGTCTCGCCGTAACTCTGTAATTGCCGGAACTCCCAATTTCAGATTAGAGCCATTTCCGGAACACTGTAACTCCGTAACTACTTTCCCGAACTCCCTTTCTGCAACCTCAGTCCCCTCTCATTCAGGATGCCAAGAACAGCATCGGCGTTGTGTCAATCAATGTCCAACCCGAAATTTCTTTTTAAATCGACAAGAGTATCGCCATGTACACAACACTTTCACCAGCAAAAACATTAGAAGGTGGATGGCCGCGGCAAGGTTAAACAACAACGGGGAACGCTGTGCTGCAGCATTGAAATGGGAAGGTATGGCAAGGACAAATGACCCAGTGGCTGGGTCGCATGGCCTCTATCTCCAAGCTCAGGCGGAAATAGCAAACTTAACAGAAGTGAATCGAAATTTGCAAGATGACATTGCGTTATACCAAGGTATGATTGAGATTCTAATGCCTCCCCCTCCTCCTCAAGATCCACAGCAATAG 627 0.4737 IRAISVTPPELLFCNLVGERRSGKFTSSAIVYLSLINFLCHLNSLAGTLSRRNSVIAGTPNFRLEPFPEHCNSVTTFPNSLSATSVPSHSGCQEQHRRCVNQCPTRNFFLNRQEYRHVHNTFTSKNIRRWMAAARLNNNGERCAAALKWEGMARTNDPVAGSHGLYLQAQAEIANLTEVNRNLQDDIALYQGMIEILMPPPPPQDPQQ 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme5680g00001 208 Coils Coil 166 186 - -
Trme5680g00001 208 ProSiteProfiles LOB domain profile. 87 187 IPR004883 -
Trme5680g00001 208 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 91 192 - -
Trme5680g00001 208 Pfam Lateral organ boundaries (LOB) domain 91 179 IPR004883 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme5680g00001 81 206 AS2 family AT5G66870 27.941 6.01e-08 50.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Trme5680g00001 LOB 4.1e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme5680g00001 - K20130 onl:109195026 35.4242