Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme567679g00001 GATTATGTTGATGCGGCGGAGTATGAGGCGTTGCTGCAGACGCTGGCGGAGAGTGATGGAAATGGAAGGAGAGGAGCTCCTCCGGCTTCAAAGTCAGCTGTGGAAGCATTGCCGACGGTGAAGATTGAATCGGAGAGTGAGCTGGTTGCTTGTGCTGTATGTAAGGATATGCTCGGTGTTGGAGATATGGCGAAGAGATTGCCGTGTGGGCATGAGTATCATGGAGATTGCATTGTTCCATGGTTGAGTTGTAGAAATTCTTGTCCT 267 0.5019 DYVDAAEYEALLQTLAESDGNGRRGAPPASKSAVEALPTVKIESESELVACAVCKDMLGVGDMAKRLPCGHEYHGDCIVPWLSCRNSCP 89
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme567679g00001 89 SUPERFAMILY RING/U-box 38 89 - -
Trme567679g00001 89 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 25 89 - -
Trme567679g00001 89 ProSiteProfiles Zinc finger RING-type profile. 51 89 IPR001841 -
Trme567679g00001 89 Pfam Zinc finger, C3HC4 type (RING finger) 51 89 - -
Trme567679g00001 89 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 16 89 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme567679g00001 Trme-Chr567679 3 269 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme567679g00001 1 89 C3H Transcription Factor Family AT5G01980 52.747 1.29e-25 96.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme567679g00001 - - gmx:100780991 170.629