Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme56726g00001 GTCCCATGTGTGAAGAAAGGAGGAATAAGGTTCACAATCAATGGACACTCATACTTCAACTTGGTTTTGGTGACAAATGTTGGTGGAGCTGGAGATGTACATTCTGTATCCATCAAAGGATCAAAGACTGGATGGCAAACTATGTCTAGGAACTGGGGGCAAAATTGGCAAAGCAATAACTACCTCAATGGTCAAAGCCTTTCTTTCCAAGTTACTACAAGTGATGGCAGGACAATCACTAGCAACAACGTTGTGCCTGGTAATTGGCAATTTGGACAGACATTTACAGGGGGACAATTTTAG 303 0.4224 VPCVKKGGIRFTINGHSYFNLVLVTNVGGAGDVHSVSIKGSKTGWQTMSRNWGQNWQSNNYLNGQSLSFQVTTSDGRTITSNNVVPGNWQFGQTFTGGQF 100
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme56726g00001 100 PANTHER EXPANSIN-A15 1 100 IPR002963 GO:0009664
Trme56726g00001 100 PRINTS Expansin/Lol pI family signature 45 59 IPR007118 GO:0005576
Trme56726g00001 100 PRINTS Expansin/Lol pI family signature 83 97 IPR007118 GO:0005576
Trme56726g00001 100 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 18 97 IPR007117 -
Trme56726g00001 100 Gene3D - 7 100 IPR036749 -
Trme56726g00001 100 Pfam Expansin C-terminal domain 9 86 IPR007117 -
Trme56726g00001 100 SUPERFAMILY PHL pollen allergen 5 97 IPR036749 -
Trme56726g00001 100 PRINTS Expansin signature 19 40 IPR002963 GO:0009664
Trme56726g00001 100 PRINTS Expansin signature 83 99 IPR002963 GO:0009664
Trme56726g00001 100 PRINTS Expansin signature 7 19 IPR002963 GO:0009664
Trme56726g00001 100 PRINTS Expansin signature 54 75 IPR002963 GO:0009664
Trme56726g00001 100 FunFam Expansin 8 100 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme56726g00001 Trme-Chr56726 346 648 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme56726g00001 1 100 Expansin Gene Family AT2G40610 83.168 1.88e-57 176
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme56726g00001 - K20628 gmx:100807183 203.756