Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme56682g00001 GATGTTGTTGAGTACTGTGGGGGATTGCCACTAGCTCTTGAAGTCATTGGGTCTTTTTTGTTTGGTAGATCTGTAGCGGAGTATAAGAGTGTACTGGAGAAACTCAAAATCATTCCCAATGATATGATAATGAGAAAGCTAAGAACAAATTTTAATGATTTAGATGATTATGGTGAGAAACCAATATTCCTTAGTGTAGCTACTTTATTTATTGGGATGGACAAAGATGATGTAATTCATACATTAAACGACTCGCGTTTTCTGGACATTGGAATAACATTCCTTGAAGAGAAAAGTCTTGTAACTATAGATAGCAAGAACAGGATTGTAATGCATACTTTGTTACAAGCATTGGGAAGAGAAATCATAAGGCAACAGTCGGGAGATATGACTCAGGTATGTTGA 405 0.3605 DVVEYCGGLPLALEVIGSFLFGRSVAEYKSVLEKLKIIPNDMIMRKLRTNFNDLDDYGEKPIFLSVATLFIGMDKDDVIHTLNDSRFLDIGITFLEEKSLVTIDSKNRIVMHTLLQALGREIIRQQSGDMTQVC 134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme56682g00001 134 Gene3D - 1 55 IPR042197 -
Trme56682g00001 134 SUPERFAMILY "Winged helix" DNA-binding domain 44 127 IPR036390 -
Trme56682g00001 134 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 1 127 IPR044974 GO:0006952
Trme56682g00001 134 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 64 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme56682g00001 Trme-Chr56682 212 616 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme56682g00001 2 127 WRKY Transcription Factor Family AT5G45050 39.062 6.33e-18 77.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme56682g00001 - - lja:Lj0g3v0331109.1 149.443