Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme56581g00001 ATGGTGGGTAACGACGATGCTCGAGCTCCATGCCACCTTTCAAATTCCCGGAAAATGTTTTGGCGCTCTGCTTCGTGGTCTTCCGCTCGTACCTCCGCCGCAAACCCTTCCGGAGAATCGGAATCGAATTTCTCAGATCCCAATTCTGGTGTTGAGAATACCAACCGGAGATTCCCTCCGCCGCCGTTGACGCCTAGGTCGCAGCAAAATTGTAAGGCACGGTCGTCGTGTTTGCCGCCTCTTCAGCCGCTTTCGATTGCTCGCCGGAGTTTGGATGAGTGGCCGAAAGCGAGTTCCGACGATATCGGGGAGTGGCCACAACCACCTATTACTCCTGGTGGTAGAGGTAATGGTAGTAGCAATANNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNATTCAGCAGAATAATAATCCTGATAGTAGGAATAATGGTGGACTTGTGAAGAGAGATAAGATTGCCTTTTTTGATAAGGAATGTTCTAAAGTTGCTGAACATGTTTATCTTGGTGGTGATGCTGTTGCTAAAGATAGGGAAATTTTGAAAAGAAATGGGATTACTCATGTTTTGAATTGTGTAG 598 0.4331 MVGNDDARAPCHLSNSRKMFWRSASWSSARTSAANPSGESESNFSDPNSGVENTNRRFPPPPLTPRSQQNCKARSSCLPPLQPLSIARRSLDEWPKASSDDIGEWPQPPITPGGRGNGSSNXXXXXXXXXXXXXXXXXIQQNNNPDSRNNGGLVKRDKIAFFDKECSKVAEHVYLGGDAVAKDREILKRNGITHVLNCV 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme56581g00001 199 Gene3D Protein tyrosine phosphatase superfamily 139 199 IPR029021 -
Trme56581g00001 199 PANTHER MKPA PROTEIN 11 199 - -
Trme56581g00001 199 MobiDBLite consensus disorder prediction 24 55 - -
Trme56581g00001 199 Coils Coil 139 142 - -
Trme56581g00001 199 MobiDBLite consensus disorder prediction 24 129 - -
Trme56581g00001 199 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 159 198 IPR029021 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme56581g00001 Trme-Chr56581 8 605 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme56581g00001 1 199 Protein tyrosine phosphatase (PTP) family AT3G55270 53.202 7.09e-66 214
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme56581g00001 - - lja:Lj1g3v3183530.1 270.781