Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme56542g00001 ATGCTGCGGCGTGTTAAAAAAGATGTAATTTCTGAGCTGACTAGCAAAACTGAAATTACCGTGCACTGCAAGTTAAGTTCTCGGCAGCAAGCTTTCTATCAAGCAATTAAGAACAAGATATCTCTTGCTGAATTGTTTGATAGTAATCGTGGACAGCTCAATGAGAAGAAAATCCTGAATTTAATGAACATTGTTATTCAACTGAGGAAGGTTTGCAACCATCCAGAGTTATTTGAAAGGAGTGAGGGAAGCACATACCTTTACTTTGGAGAGATTCCAAATTCCCTTCCTCCTCCTCCATTTGGGGAGTTAGAGGATGTATATTATTCTGGTGGTCATAACCCCATCTCATATGAGTCACCCCTATCAAGCCACTCAGGTCATCCTCTAGATGTCCAGTCCTGGGCGTAG 411 0.4161 MLRRVKKDVISELTSKTEITVHCKLSSRQQAFYQAIKNKISLAELFDSNRGQLNEKKILNLMNIVIQLRKVCNHPELFERSEGSTYLYFGEIPNSLPPPPFGELEDVYYSGGHNPISYESPLSSHSGHPLDVQSWA 136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme56542g00001 136 Gene3D - 14 83 IPR027417 -
Trme56542g00001 136 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 6 80 IPR027417 -
Trme56542g00001 136 PANTHER HELICASE SRCAP-RELATED 1 96 - -
Trme56542g00001 136 Gene3D - 1 13 IPR038718 -
Trme56542g00001 136 Pfam SNF2-related domain 1 78 IPR000330 GO:0005524|GO:0140658
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme56542g00001 Trme-Chr56542 1 888 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Trme56542g00001 SNF2_N 4.1e-09 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme56542g00001 K11665 - gmx:100780615 241.121