Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme56513g00001 ACCAACTGTAGCAGTCTTTCCAATCCATCATCAGTGGAAGATGAAACTAATCATAGCGACCAGACCGACAATCGATCAGATAATTATCCTATTTATCACAAGGATAGCAACCAGCTTGCTTCTGAAAATTTATCTAATGATGCTATTAACTGTTCCAATTTGGGCGGAGTGGGACGTCCCACTGATGCAGATTCCTTGTCAGACAAGCAGGTTGCTGTAGGAATGACTGNNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNAGCACCGATGATGGGTCAGTTCCAACGGGAAGGGAATGTGTTCCGTTAGCAGGTACCTCAAAAGGGGGATTGCCTAATACTCCCGGAAGGTTGGAATTACTTAAAGATGGTCCGGGAAGAAAAGGTAGATCTAAATTAAGTGGCAAAGATCTAGAAAATGGATCTGGGAAAAGGGGTGGTCCTCGAGATGGAAGCACATCCAAGAAGAGAAGTGGTGAAAGGCAAGACGAAGGCTGCGAGGGAAATGGTTTTCCGGATCGGGATTTCGAGTATTATGTGAAGGTGATTAGATGGTTAGAGTGTGAAGGACACATAGAAAAGAACTTCAGACAGAAATTTCTGACTTGGTACAGCNNNNNNNNNNANCCTGAAGAAATAAGGATTGTGAAAATATATGTAGATACATTTCATGAAGATCCGGCTTCTCTTGCTGAGCAACTTGTGGACACCTTCTCAGATTGTGTATCAAACAAGAGATCATCAGTTCCTGCAGGGTTCTGCATGAAGCTTTGGCATTGA 822 0.3893 TNCSSLSNPSSVEDETNHSDQTDNRSDNYPIYHKDSNQLASENLSNDAINCSNLGGVGRPTDADSLSDKQVAVGMTXXXXXXXXXXXXXXXXXXXXXXXXXSTDDGSVPTGRECVPLAGTSKGGLPNTPGRLELLKDGPGRKGRSKLSGKDLENGSGKRGGPRDGSTSKKRSGERQDEGCEGNGFPDRDFEYYVKVIRWLECEGHIEKNFRQKFLTWYSXXXXPEEIRIVKIYVDTFHEDPASLAEQLVDTFSDCVSNKRSSVPAGFCMKLWH 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme56513g00001 273 MobiDBLite consensus disorder prediction 1 37 - -
Trme56513g00001 273 MobiDBLite consensus disorder prediction 94 182 - -
Trme56513g00001 273 MobiDBLite consensus disorder prediction 1 15 - -
Trme56513g00001 273 MobiDBLite consensus disorder prediction 16 30 - -
Trme56513g00001 273 PANTHER VIN3-LIKE PROTEIN 2-RELATED 2 273 IPR044514 GO:0010048|GO:0040029
Trme56513g00001 273 MobiDBLite consensus disorder prediction 135 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme56513g00001 Trme-Chr56513 2 823 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme56513g00001 141 273 PHD Gene Family AT5G57380 44.444 3.84e-32 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme56513g00001 - - gmx:100819331 393.275