LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trme56505g00001	ATGGCTAGATCTTTGCCACTTGATAAGCACACGTTAGTGACCCATTTGAGGAAAGACTTTAATGAAGTTGTAGCAGTAACAGGAGATGGGACCAATGATGCTCCAGCTTTGCATGAAGCTGATATTGGATTTGCTATGGGTATTGCTGGAACAGAGGTTGCAAAAGAGAATGCAGATGTAATTGTAATGGATGATAACTTCGCAACAATTGTGAATGTTACAAAATGGGGACGTTCTGTTTATATTAACATACAAAAGTTTGTCCAGTTCCAGTTAACAGTTAATGTTGTAGCCCTCTTGCTGAATTTTGTTTCAGCTTGTGTATCAGGTGCTACATAA	339	0.3864	MARSLPLDKHTLVTHLRKDFNEVVAVTGDGTNDAPALHEADIGFAMGIAGTEVAKENADVIVMDDNFATIVNVTKWGRSVYINIQKFVQFQLTVNVVALLLNFVSACVSGAT	112

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trme56505g00001	112	NCBIfam	HAD-IC family P-type ATPase	1	109	IPR001757	GO:0005215\|GO:0005524\|GO:0016020\|GO:0016887
	Trme56505g00001	112	Gene3D	-	73	108	-	-
	Trme56505g00001	112	PRINTS	P-type cation-transporting ATPase superfamily signature	27	46	-	-
	Trme56505g00001	112	PRINTS	P-type cation-transporting ATPase superfamily signature	51	63	-	-
	Trme56505g00001	112	PANTHER	CATION TRANSPORTING ATPASE	1	111	-	-
	Trme56505g00001	112	PRINTS	H+-transporting ATPase (proton pump) signature	59	84	IPR001757	GO:0005215\|GO:0005524\|GO:0016020\|GO:0016887
	Trme56505g00001	112	PRINTS	H+-transporting ATPase (proton pump) signature	27	43	IPR001757	GO:0005215\|GO:0005524\|GO:0016020\|GO:0016887
	Trme56505g00001	112	Pfam	haloacid dehalogenase-like hydrolase	12	68	-	-
	Trme56505g00001	112	Gene3D	-	1	72	IPR023214	-
	Trme56505g00001	112	SUPERFAMILY	HAD-like	2	101	IPR036412	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trme56505g00001	Trme-Chr56505	3	866	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trme56505g00001	1	111	Primary Pumps ATPases	AT3G57330	87.387	5.10e-62	201

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trme56505g00001	K01537		-	gmx:100801260	208.379