LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trme56472g00001	ACCACCGAATCACTTTCCATAACAATACCACCAACAAAGAAACCGTCAACGCCGCCACCTCCCAACAGCCTATGCCGCGTCGGAAGCGGCACAAGCACGGTGGTGGACTCTGACGGCAGCGGCGTTGGAGAAGCCGAGTCACGGAAGCTTCCCTCATCCAAGTACAAAGGCGTGGTGCCACAACCAAACGGCCGTTGGGGAGCACAGATTTACGAAAAGCATCAGCGCGTGTGGCTTGGTACCTTTAACACAGAAGACGAAGCTGCGAGAGCTTACGATGTYGCCGCGCAACGGTTCCGCGGCAAAGACGCTGTAACAAACTTCAAACCACTCTCCAATGATGACAACGACGACATGGAAGTCGAGTTTCTTAACTCGCATTCCAAGTCAGAGATCGTTGACATGTTAAGAAAACACACATACAATGATGAGTTAGAACAGAGTAAGCGCAGCCGTGGCTTCATCAACAGACGAAGCCACGGTGACTCTAACTGTTCTAACTTCGCCAGTTTCCAATCCAGCGAGAAAAAGGCGCGTGAGGATCTATTCGAGAAGGTTGTTACTCCGAGCGACGTTGGTAAACTAAACAGGCTAGTTATACCGAAACAGCATGCCGAGAAGCATTTTCCGTTACAAAAAGCCGTCGATTGCGGCGCTGAAGGAAGCGCCGCAGCAGCGGCAGGGAAGGGAGTGCTTTTAAATTTTGAAGACGTTGGAGGTAAAGTATGGCGGTTTAGATACTCTTATTGGAACAGTAGCCAAAGTTACGTTCTAACTAAAGGATGGAGCCGGTTCGTTAAAGAGAAGAATCTGAAAGCCGGTGATACGGTTTGTTTTCAACGGTCTACTACAGGACCGGATAAGCAGCTTTTTATTGATTGGAAAGCAAGAAAGAATGTTAATGAGG	907	0.4895	TTESLSITIPPTKKPSTPPPPNSLCRVGSGTSTVVDSDGSGVGEAESRKLPSSKYKGVVPQPNGRWGAQIYEKHQRVWLGTFNTEDEAARAYDVAAQRFRGKDAVTNFKPLSNDDNDDMEVEFLNSHSKSEIVDMLRKHTYNDELEQSKRSRGFINRRSHGDSNCSNFASFQSSEKKAREDLFEKVVTPSDVGKLNRLVIPKQHAEKHFPLQKAVDCGAEGSAAAAAGKGVLLNFEDVGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDTVCFQRSTTGPDKQLFIDWKARKNVNE	302

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trme56472g00001	302	MobiDBLite	consensus disorder prediction	23	38	-	-
	Trme56472g00001	302	CDD	AP2	53	108	IPR001471	GO:0003700\|GO:0006355
	Trme56472g00001	302	PRINTS	Ethylene responsive element binding protein signature	55	66	IPR001471	GO:0003700\|GO:0006355
	Trme56472g00001	302	PRINTS	Ethylene responsive element binding protein signature	75	91	IPR001471	GO:0003700\|GO:0006355
	Trme56472g00001	302	Pfam	B3 DNA binding domain	183	294	IPR003340	GO:0003677
	Trme56472g00001	302	SUPERFAMILY	DNA-binding pseudobarrel domain	182	285	IPR015300	-
	Trme56472g00001	302	SMART	rav1_2	54	115	IPR001471	GO:0003700\|GO:0006355
	Trme56472g00001	302	MobiDBLite	consensus disorder prediction	1	64	-	-
	Trme56472g00001	302	FunFam	AP2 domain-containing protein RAP2.8	53	110	-	-
	Trme56472g00001	302	SUPERFAMILY	DNA-binding domain	53	109	IPR016177	GO:0003677
	Trme56472g00001	302	ProSiteProfiles	AP2/ERF domain profile.	54	109	IPR001471	GO:0003700\|GO:0006355
	Trme56472g00001	302	Gene3D	AP2/ERF domain	53	110	IPR036955	GO:0003700\|GO:0006355
	Trme56472g00001	302	PANTHER	B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3	49	298	IPR044800	GO:0003700
	Trme56472g00001	302	Pfam	AP2 domain	53	101	IPR001471	GO:0003700\|GO:0006355
	Trme56472g00001	302	CDD	B3_DNA	182	285	IPR003340	GO:0003677
	Trme56472g00001	302	Gene3D	-	177	302	IPR015300	-
	Trme56472g00001	302	ProSiteProfiles	B3 DNA-binding domain profile.	183	297	IPR003340	GO:0003677
	Trme56472g00001	302	SMART	B3_2	183	298	IPR003340	GO:0003677

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trme56472g00001	Trme-Chr56472	1	907	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trme56472g00001	1	297	RAV Transcription Factor Family	AT1G13260	67.224	1.44e-129	370

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-RAV	Trme56472g00001		B3	1e-28	CL0405

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trme56472g00001	K09287		-	gmx:100776987	455.677