Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Trme56365g00001 | GATGTCCATGGCCAGTTTTCTGACCTTTTAAGGCTGTTTGAGTACGGAGGATACCCACCCGAAGCAAATTATTTGTTTCTTGGAGATTATGTTGATCGTGGTAAGCAGAGCATAGAGACAATATGCTTACTCCTTGCATACAAAATCAAATACAAGGAGAACTTCTTTCTTCTCAGGGGCAACCATGAATGCGCCTCCATCAATCGCATATATGGTTTCTATGATGAGTGCAAGAGGAGGTTCAATGTTCGCCTCTGGAAGACATTTACTGATTGCTTTAATTGTTTACCGGTGGCTGCTCTAGTAGATGAGAAGATCCTTTGCATGCATGGTGGATTGTCTCCCGAACTTAAAAACTTAGATCAGATACGGAACATTGCTCGCCCTATTGATGTGCCAGATCATGGCCTTCTCTGTGACCTTCTGTGGGCTGATCCTGATAAAGATCTTGAGGGATGGGGAGAAAATGATCGAGGTGTTTCATTCACATTTGGGGCTGATAAGGTTGCTGAGTTTCTTGAGCAGCATGATCTTGATCTGATTTGCAGAGCTCACCAGGTAATGAACCCTGTAGTTTGGTTGATTTCAATGGTTTTAAAGTTTCTTCTTGATTGA | 615 | 0.426 | DVHGQFSDLLRLFEYGGYPPEANYLFLGDYVDRGKQSIETICLLLAYKIKYKENFFLLRGNHECASINRIYGFYDECKRRFNVRLWKTFTDCFNCLPVAALVDEKILCMHGGLSPELKNLDQIRNIARPIDVPDHGLLCDLLWADPDKDLEGWGENDRGVSFTFGADKVAEFLEQHDLDLICRAHQVMNPVVWLISMVLKFLLD | 204 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Trme56365g00001 | 204 | SMART | pp2a_7 | 1 | 202 | IPR006186 | GO:0016787 | |
| Trme56365g00001 | 204 | SUPERFAMILY | Metallo-dependent phosphatases | 1 | 190 | IPR029052 | - | |
| Trme56365g00001 | 204 | PRINTS | Serine/threonine phosphatase family signature | 120 | 147 | IPR006186 | GO:0016787 | |
| Trme56365g00001 | 204 | PRINTS | Serine/threonine phosphatase family signature | 57 | 81 | IPR006186 | GO:0016787 | |
| Trme56365g00001 | 204 | PRINTS | Serine/threonine phosphatase family signature | 91 | 117 | IPR006186 | GO:0016787 | |
| Trme56365g00001 | 204 | PRINTS | Serine/threonine phosphatase family signature | 177 | 197 | IPR006186 | GO:0016787 | |
| Trme56365g00001 | 204 | PRINTS | Serine/threonine phosphatase family signature | 24 | 51 | IPR006186 | GO:0016787 | |
| Trme56365g00001 | 204 | PANTHER | SERINE/THREONINE PROTEIN PHOSPHATASE | 1 | 189 | - | - | |
| Trme56365g00001 | 204 | FunFam | Serine/threonine-protein phosphatase | 1 | 194 | - | - | |
| Trme56365g00001 | 204 | Gene3D | - | 1 | 194 | IPR029052 | - | |
| Trme56365g00001 | 204 | Pfam | Calcineurin-like phosphoesterase | 1 | 186 | IPR004843 | GO:0016787 | |
| Trme56365g00001 | 204 | ProSitePatterns | Serine/threonine specific protein phosphatases signature. | 58 | 63 | IPR006186 | GO:0016787 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Trme56365g00001 | Trme-Chr56365 | 62 | 676 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Trme56365g00001 | 1 | 183 | Calmodulin-binding Proteins | AT5G63870 | 29.358 | 7.30e-26 | 99.8 |