Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme56289g00001 ATGTACTACAAGGAAGCAGACAAACCAGCACATGCTCGCACTTCAAACTTGAACGAGGAGCTTGGTCAAGTTGACACAATACTTTCTGATAAAACTGGAACTTTGACCTGCAACTCAATGGAATTCATTAAATGTTCGATCGCTGGTGTAGCTTATGGCCGTGGTGTTACGGAGGTTGAGAAGACCATGAGTAGAAGAAAAAGTTCAACGTTAGTTCGTGAGCATGATATATCAGAAGAAGATGACATCAGGGGTTCTCTTAATAAAAAAGCTGCCATAAAAGGTTTTAACTTTACTGATGAAAGAATAATGAATGGTAATTGGGTTAATGAGCCTCATGCAGATGTTATCGAGAAGTTTTTTCGCCTATTGGCAGTCTGTCATACAGCCATACCAGAAGTAGATAAAGACACTGGAAATGTGTCGTACGAGGCCGAATCTCCTGATGAAGCAGCATTTGTTATTGCGGCAAGAGAACTTGGTTTTGAATTCTACAAAAGGGCTCAGACTAGTTTATCAACATACGAGTTGGATCCAGTTTCGGGCGATAAAGTTGAAAGGTCAGTTGTTTCAATTGCTTAG 582 0.4038 MYYKEADKPAHARTSNLNEELGQVDTILSDKTGTLTCNSMEFIKCSIAGVAYGRGVTEVEKTMSRRKSSTLVREHDISEEDDIRGSLNKKAAIKGFNFTDERIMNGNWVNEPHADVIEKFFRLLAVCHTAIPEVDKDTGNVSYEAESPDEAAFVIAARELGFEFYKRAQTSLSTYELDPVSGDKVERSVVSIA 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme56289g00001 193 SUPERFAMILY HAD-like 16 60 IPR036412 -
Trme56289g00001 193 ProSitePatterns E1-E2 ATPases phosphorylation site. 30 36 IPR018303 -
Trme56289g00001 193 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 1 174 - -
Trme56289g00001 193 Gene3D - 33 188 IPR023299 GO:0000166
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme56289g00001 Trme-Chr56289 259 840 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme56289g00001 1 187 Primary Pumps ATPases AT1G26130 73.797 2.02e-92 290
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme56289g00001 K01530 - gmx:100792960 324.324