Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme56277g00001 ATGCACCCACTAAATATCGTTAAATCGAGGCAGCAAGTTTCGTTCACAAATGAAAGCGCTACCAAAGCTTTTACTGAGCTGCTGACTGGAAGAAATCTGCAGTCACTGTACAAAGGATTTGGCTGGACTGTTTCAACAACCATTCCCTCAAAACTCTTGTACCTTGCAACCATTGATTCAAACCAAGAAGCTCTTTATCATATTTTCAATGGATTTCCTCTTGAAGAAAAGAACAAAAAGTTTCTTTCCAGTGAAACAGCTTCCGTGATATCAACCATATTGGCTCAATCAATATCAGTTCCGGGGGACATTATTAAAAAGACCATAATGGCTCAAGGATATGACAAGAGGAAGGCTTACAGTGGTGGATTGGATATCATATCCCAAATTCTAAAGACAGACGGGGTGAACGGTCTTTACAAAGGAGGACTTACTACTTGCTTTAGTCATCCGTTCGACACAATCACCACAAGAGTACAG 480 0.4042 MHPLNIVKSRQQVSFTNESATKAFTELLTGRNLQSLYKGFGWTVSTTIPSKLLYLATIDSNQEALYHIFNGFPLEEKNKKFLSSETASVISTILAQSISVPGDIIKKTIMAQGYDKRKAYSGGLDIISQILKTDGVNGLYKGGLTTCFSHPFDTITTRVQ 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme56277g00001 160 ProSiteProfiles Solute carrier (Solcar) repeat profile. 1 64 IPR018108 -
Trme56277g00001 160 ProSiteProfiles Solute carrier (Solcar) repeat profile. 79 160 IPR018108 -
Trme56277g00001 160 Gene3D Mitochondrial carrier domain 1 148 IPR023395 -
Trme56277g00001 160 Pfam Mitochondrial carrier protein 79 148 IPR018108 -
Trme56277g00001 160 Pfam Mitochondrial carrier protein 1 66 IPR018108 -
Trme56277g00001 160 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN J 1 146 - -
Trme56277g00001 160 SUPERFAMILY Mitochondrial carrier 1 146 IPR023395 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme56277g00001 Trme-Chr56277 125 844 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme56277g00001 1 151 Chloroplast and Mitochondria Gene Families AT5G15640 27.097 8.13e-24 92.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme56277g00001 K15121 - gmx:100782750 109.768