Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme5624g00001 GCAGTTTCCTATGTAAGGACATTGTATGCATTTACAAATGAAACGTTGGCCAAGTACTCATATGCAACATCACTGCAAGCTACTCTTAGATATGGAATATTAATAAGTCTTGTTCAAGGGCTAGGTCTTGGATTCACGTATGGACTTGCAATATGTTCTTGTGCATTACAACTCTGGGTTGGAAGATTTTTGGTTATTCACGGAAAAGCGCATGGCGGTGAAATAGTAACGGCTCTTTTTGCTGTAATTCTAAGTGGCCTGGGATTGAATCAAGCAGCAACAAATTTCTACTCCTTTGAACAAGGGCGGATAGCTGCTTATAGATTATATGAGATGATAAGCCGGTCATCCTCATCTGTTAATGATGATGGCACTTCCCTTGACTCTGTGCAAGGAAATATAGTGTTTCGGAATGTTTATTTCAGCTATCTGTCTCGTCCCGAAATCCCTATCTTGAGTGGATTTTATCTCACTGTACCTTCTAAGAAAGCTGTAGCACTTGTTGGCAGAAATGGCTCTGGAAAAAGTAGTATTATTCCACTCATGGAGCGTTTTTATGATCCTACGTTAGGAGAAGTTCTTTTAGATGGTGAAAACATCAAGAATTTGAATTTGGAATGGCTGAGGAGCCAGATAGGACTAGTTACCCAGGAGCCTGCTTTGCTCAGTTTGAGTATAAGAGATAACATTGCTTATGGGAGAGATGTCACCATGGATCAAATTGAAGAGGCTGCTAAAATAGCTCATGCACATACATTTATCAGCTCATTGAAGAAAGGTTATGACACACAGGTTGGCAGGGCAGGTTTAGCTTTGACTGAAGAGCAGAAAATAAAACTTTCTATTGCAAGAGCTGTGCTTCTAAATCCATCAATTCTTCTGCTTGATGAAGTAACTGGTGGACTTGATTTTGAGGCTGAGAGGGCTGTTCATGAGGCTCTGGATATGCTTATGTTGGGACGCTCAACAATAATAATTGCTCGAAGGCTTAGTCTCATAAGAAATGCTGATTATATAGCTGTTATGGAGGAGGGTCAACTCGTTGAAATGGGTACTCATGATGAATTGTTGAACCTGAATGGCTTATATGCAGAGCTTCTACGAGGTGAAGAGGCAGCAAAACTTCCCAAGCGGATGGAGAAAGTGGCAAGACATAGAATAATAAACTAA 1170 0.4051 AVSYVRTLYAFTNETLAKYSYATSLQATLRYGILISLVQGLGLGFTYGLAICSCALQLWVGRFLVIHGKAHGGEIVTALFAVILSGLGLNQAATNFYSFEQGRIAAYRLYEMISRSSSSVNDDGTSLDSVQGNIVFRNVYFSYLSRPEIPILSGFYLTVPSKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLNLEWLRSQIGLVTQEPALLSLSIRDNIAYGRDVTMDQIEEAAKIAHAHTFISSLKKGYDTQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVHEALDMLMLGRSTIIIARRLSLIRNADYIAVMEEGQLVEMGTHDELLNLNGLYAELLRGEEAAKLPKRMEKVARHRIIN 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme5624g00001 389 PANTHER ABC TRANSPORTER B FAMILY 1 368 IPR039421 -
Trme5624g00001 389 SMART AAA_5 161 346 IPR003593 GO:0016887
Trme5624g00001 389 Pfam ABC transporter 155 299 IPR003439 GO:0005524
Trme5624g00001 389 FunFam ABC transporter B family member 20 124 371 - -
Trme5624g00001 389 Gene3D - 124 379 IPR027417 -
Trme5624g00001 389 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 123 368 IPR027417 -
Trme5624g00001 389 SUPERFAMILY ABC transporter transmembrane region 2 113 IPR036640 GO:0005524|GO:0016020
Trme5624g00001 389 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 134 369 IPR003439 GO:0005524
Trme5624g00001 389 Gene3D ABC transporter type 1, transmembrane domain 1 115 IPR036640 GO:0005524|GO:0016020
Trme5624g00001 389 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 1 101 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme5624g00001 Trme-Chr5624 439 1995 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme5624g00001 2 373 Calmodulin-binding Proteins AT2G36910 48.276 6.98e-111 350
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme5624g00001 K05658 - gmx:100789116 689.493