Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme562220g00001 TGCTTTCAGATTCTTATTGGTCCTTCTGATTGGGAAGACCATTCCAAAGGAAAGGAAGGATCTGCCAGATACAGGATTCACAACCTTCCTCAGAAATTGTGTCCAGGAGTGTACGAGCTTGGTGTAGCTGTGTCATATAATGGTTTGGGGCGAGAAATTTACAAGCTTACCACTGACCCTCGCCGCGTAGTTGTGGTTTACCTTGGTAAAGCTGACAATGTGAGAGCAAGACTCCAGCGTTATGGAAGGACTGGAGCTCATTTGAGTAAT 270 0.4556 CFQILIGPSDWEDHSKGKEGSARYRIHNLPQKLCPGVYELGVAVSYNGLGREIYKLTTDPRRVVVVYLGKADNVRARLQRYGRTGAHLSN 90
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme562220g00001 90 Pfam GIY-YIG domain-containing protein 2 90 - -
Trme562220g00001 90 PANTHER PROTEIN EFFECTOR OF TRANSCRIPTION 2-RELATED 3 90 IPR038909 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme562220g00001 Trme-Chr562220 1 270 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme562220g00001 2 90 HRT Transcription Factor Family AT5G56780 56.180 2.15e-28 104
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme562220g00001 - - qsu:112018327 137.502