Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme56203g00001 ATGGTTGGAACATATGGTTACATGCCTCCAGAGTATGCCGTGCATGGCCATTACTCCATAAAATCAGATGTCTTTAGTTTTGGTGTATTGGTACTAGAGATAATTAGCGGGAAAAAGAATAAGGGATTTTCAGATCCGGAACACTCCCTTAACCTTCTTGGACACGCATGGAGACTCTGGACTGAAAACAGACCATTGGAATTGCTAGATAGACATTTACTTGAAACATGTAATTCTTCTGAAGTCTTTAGATGCATACATGTGGGTTTGTTGTGTGTACAACAAAAACCACCGGATAGGCCAGACATGTCTTCTGTCATTCTTATGCTGAATGGTGAGAAACTATTGCCTCAGCCGAAGATGCCTGGATTTTACACCGGAAGAGGTTTACCCGAAGCAATTTCCTCAAATCAGATGTCAGTAACTACATTTGTGGCAAGATAG 444 0.4122 MVGTYGYMPPEYAVHGHYSIKSDVFSFGVLVLEIISGKKNKGFSDPEHSLNLLGHAWRLWTENRPLELLDRHLLETCNSSEVFRCIHVGLLCVQQKPPDRPDMSSVILMLNGEKLLPQPKMPGFYTGRGLPEAISSNQMSVTTFVAR 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme56203g00001 147 Pfam Protein tyrosine and serine/threonine kinase 6 107 IPR001245 GO:0004672|GO:0006468
Trme56203g00001 147 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 1 132 - -
Trme56203g00001 147 Gene3D Transferase(Phosphotransferase) domain 1 1 117 - -
Trme56203g00001 147 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase B120 1 115 - -
Trme56203g00001 147 ProSiteProfiles Protein kinase domain profile. 1 116 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme56203g00001 147 SUPERFAMILY Protein kinase-like (PK-like) 1 133 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme56203g00001 Trme-Chr56203 148 793 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme56203g00001 1 142 Receptor kinase-like Gene Family AT4G23140 51.333 6.51e-49 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trme56203g00001 PK_Tyr_Ser-Thr 1.4e-08 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme56203g00001 - - gmx:100782811 241.891