Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme5615g00001 ATGCCTACAAATGCTGATCCTCCAACTCCAGGAATTTCAAAGGGTATGCCTACTCATACAAAGAACAACAGTCAAAGTGGACCCGGAAGTGGAACTAGCTCGCGCAGCGACAGTTTAGAGAGCACAAGTTGTTCTTCAAACATTAGGCCACATACTGGTGGTGATGTAAGGTGGGATGCAATTAACATGGCTTTGAAAAATGGTCCTCTTAATCTTAGCCATTTTCGGCTTCTTAAGCGTATCGGTTATGGAGACATTGGAAGTGTGTATCTTGTTGAACTTAAAGGAACTGACGCTCATTTTGCGATGAAAGTAATGGACAAGGCTGCTCTTATAAGTAGAAACAAGCTTCTTAGATCACAAACTGAAAGGGAGATTCTTGGTCTTCTTGATCACCCCTTTTTGCCTACTTTGTATTCTTACTTTGAAACTGATAAGTTTTACTGTCTCGTTATGGAGTACTGTAGTGGCGGTGATCTTCATTCACTTCGACAGAAACAACCAAATAAGTGTTTCACTGAAGAAGCTGCAAGACTTTACTTACCTCCCAGCCGAACTCTAGATTACCGGGAGGACCTTTCCCTGGGAACCAGAGGGTTCTATGCTTCAGAGGTTTTGTTAGCTCTTGAGTACCTACACATGCTTGGCATTGTATACAGAGACTTAAAGCCAGAGAATCTTTTAGTTAGAGATGAAGGTCACATCATGCTCTCAGATTTCGATTTATCNCTTCGCTGCTCTGTCTGTCCTACACTTGTCAAGTCTTCATCTACCCACGCAGCAAGCGGCAGTAGCAGTGATTATGGAAGTATATTGAATGATGACCAAGCAGCTGCTCAGCCATCAACAGGCTTCTTCCCTCGAATTTTGCCTTCCAAAAAGAATCGGAAGGCAAAATCAGACTTCGGCCTATTGGTTAACGGAAACCGCCTTCCGGAACTAATGGCAGAACCAACCAATGTGAGATCAATGTCTTTTGTAGGTACACATGAATATCTTGCACCTGAAATCATCAAAGGAGAAGGACATGGTAGTGCAGTAGATTGGTGGACTTTCGGAATCTTCTTGTATGAATTGTTGCACGGTGCAACGCCTTTTAAAGGCGCAGGATATAAAGCAACACTATTCAATGTTGTTGGACAGCCATTAAGGTTTCCAGATAGTCCTCAAATTAGTCCTGTGGCTAAAGATCTTATTAGAGGATTGTTGGTGAAGGAACCTCAGAAGAGAATTGCATACAAAAGAGGAGCAACAGAAATAAAACAGCATCCATTTTTTGAAGGAGTGAATTGGGCTCTAGTTAGAAGTGCAACACCACCACATATACCAGATATGATAGACTTTTCAAAGTATGCTAAAAAAGAAACAGCACCACCACCAGTTGATAAGAAGATGCCAGAAATTGCTAGTGATAAAA 1417 0.4185 MPTNADPPTPGISKGMPTHTKNNSQSGPGSGTSSRSDSLESTSCSSNIRPHTGGDVRWDAINMALKNGPLNLSHFRLLKRIGYGDIGSVYLVELKGTDAHFAMKVMDKAALISRNKLLRSQTEREILGLLDHPFLPTLYSYFETDKFYCLVMEYCSGGDLHSLRQKQPNKCFTEEAARLYLPPSRTLDYREDLSLGTRGFYASEVLLALEYLHMLGIVYRDLKPENLLVRDEGHIMLSDFDLSLRCSVCPTLVKSSSTHAASGSSSDYGSILNDDQAAAQPSTGFFPRILPSKKNRKAKSDFGLLVNGNRLPELMAEPTNVRSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLHGATPFKGAGYKATLFNVVGQPLRFPDSPQISPVAKDLIRGLLVKEPQKRIAYKRGATEIKQHPFFEGVNWALVRSATPPHIPDMIDFSKYAKKETAPPPVDKKMPEIASDK 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme5615g00001 472 ProSitePatterns Serine/Threonine protein kinases active-site signature. 217 229 IPR008271 GO:0004672|GO:0006468
Trme5615g00001 472 SUPERFAMILY Protein kinase-like (PK-like) 64 446 IPR011009 -
Trme5615g00001 472 PANTHER FLIPPASE KINASE 1-RELATED 30 451 - -
Trme5615g00001 472 SMART serkin_6 75 426 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme5615g00001 472 Gene3D Transferase(Phosphotransferase) domain 1 188 447 - -
Trme5615g00001 472 Pfam Protein kinase domain 300 426 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme5615g00001 472 Pfam Protein kinase domain 76 250 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme5615g00001 472 FunFam Serine/threonine-protein kinase AGC1-5 73 158 - -
Trme5615g00001 472 Gene3D Phosphorylase Kinase; domain 1 69 187 - -
Trme5615g00001 472 ProSiteProfiles Protein kinase domain profile. 75 426 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme5615g00001 472 FunFam Serine/threonine-protein kinase AGC1-7 319 444 - -
Trme5615g00001 472 CDD STKc_phototropin_like 73 447 - -
Trme5615g00001 472 MobiDBLite consensus disorder prediction 15 50 - -
Trme5615g00001 472 MobiDBLite consensus disorder prediction 1 50 - -
Trme5615g00001 472 FunFam Serine/threonine-protein kinase OXI1 186 248 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme5615g00001 Trme-Chr5615 1 1754 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme5615g00001 39 455 AGC Kinase Gene Family AT1G79250 74.528 0.0 624
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Trme5615g00001 Pkinase 8.2e-33 CL0016