Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme5614g00001 ATGAATTTTGAAGATGAAAAGATAAACCTTGGACGTGGGAGTGCCGGTGAGGTGTATAGAGGCGTTTTGCCTAGTGGTCAAGTTGTGGCCATCAAGCATTTGATAAAGAATAACACCTCTAGTTCAGATTCTTTCACCCGAGAACTCGCTGGTCTTTCGAGGCTTCGTCATCCAAACCTTGTTTGCTTGTTTGGTTGTTGCATGGAAGATGGTGAGAGATATTTAGTCTACGAATTTTGCGCCAATGGAAATCTTGCTCAACATCTCTTGAAGGGTTGTGTTGTCCATAGAGATATCAAGCTTACAAACATTCTTTTGACTGAGAAATACGAAGCCAAACTGTCGGATTTTGGTTTGTCAAGGATGATGGGGATGGAAGAGAGCAAAGTTTTTACTGATGTTAGAGGAACCATAGGTTACATGGATCCGGAGTACATGAGCAATGCAAAACTAACATGTGCGAGTGATGTATATAGTTTCGGAATTGTTGCTTTGCAAATTCTGTCTGGACAGAAAGTCATAGAATTGGATCTTGATGCTAGAGATCAACTCACCAGAAAGGCAAGAGATGTGAGTTTGGGAAAGCGTCCATTGTCGGATTTTGTAGACTCGCGACTAAAGGGACAAGTTGATAAGGATGATTTTGGAGACATTTTACAGATTGCAGTACTTTGTGTTGCCAAATCAAGCACAGGACGCCCAACAATTGGGGTTGTTTTTGACGAATTGGACAAAGTCTACGGGAACATAGAGGCGCGCAACAAGGCAACCCCATCAACATCAACATCTAGCTCTAATTGA 801 0.4207 MNFEDEKINLGRGSAGEVYRGVLPSGQVVAIKHLIKNNTSSSDSFTRELAGLSRLRHPNLVCLFGCCMEDGERYLVYEFCANGNLAQHLLKGCVVHRDIKLTNILLTEKYEAKLSDFGLSRMMGMEESKVFTDVRGTIGYMDPEYMSNAKLTCASDVYSFGIVALQILSGQKVIELDLDARDQLTRKARDVSLGKRPLSDFVDSRLKGQVDKDDFGDILQIAVLCVAKSSTGRPTIGVVFDELDKVYGNIEARNKATPSTSTSSSN 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme5614g00001 266 SMART serkin_6 3 247 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme5614g00001 266 Gene3D Transferase(Phosphotransferase) domain 1 81 263 - -
Trme5614g00001 266 ProSiteProfiles Protein kinase domain profile. 4 247 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme5614g00001 266 Gene3D Phosphorylase Kinase; domain 1 1 79 - -
Trme5614g00001 266 Pfam Protein kinase domain 88 181 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme5614g00001 266 ProSitePatterns Serine/Threonine protein kinases active-site signature. 94 106 IPR008271 GO:0004672|GO:0006468
Trme5614g00001 266 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 2 90 - -
Trme5614g00001 266 PIRSF ILK 17 94 - -
Trme5614g00001 266 PIRSF ILK 88 259 - -
Trme5614g00001 266 SUPERFAMILY Protein kinase-like (PK-like) 10 247 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme5614g00001 Trme-Chr5614 414 1774 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme5614g00001 2 246 Receptor kinase-like Gene Family AT1G30570 37.545 7.07e-47 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_URK-2 Trme5614g00001 Pkinase 3.4e-21 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme5614g00001 - - vum:124837890 416.001