Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme56138g00001 ATGGTCAAGCTTCCTTTCTTTACTTCATATGCCACAAGATTGACTATAGATGACAAAGGGTGGGTACATACAGGAGATCTTGGATATTTTGATGAGGATGGCCATCTTTTTGTTGTTGACCGTATCAAAGAACTGATCAAGTATAAAGGTTTCCAGGTTGCACCAGCAGAACTTGAAGGACTTCTTGTTTCTCATCCTGAAATACTTGATGCTGTGGTTATTCC 224 0.3973 MVKLPFFTSYATRLTIDDKGWVHTGDLGYFDEDGHLFVVDRIKELIKYKGFQVAPAELEGLLVSHPEILDAVVIP 75
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme56138g00001 75 Gene3D - 6 46 IPR042099 -
Trme56138g00001 75 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 11 75 - -
Trme56138g00001 75 SUPERFAMILY Acetyl-CoA synthetase-like 12 75 - -
Trme56138g00001 75 Pfam AMP-binding enzyme 11 48 IPR000873 -
Trme56138g00001 75 Gene3D - 47 75 IPR045851 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme56138g00001 Trme-Chr56138 58 673 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme56138g00001 11 75 Monolignol Biosynthesis Gene Families AT4G05160 87.692 1.18e-35 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme56138g00001 K01904 - csav:115699132 131.339