Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme561235g00001 GAAAATGATGGTTGCATCACTGATGTAGGACTCACTCCCCTAATGAACACCTCATCAACCATGTCAAGGTCCAACGGCTACCGCGCCCCAGAAGCTTCAGAGTCAAGGAATATCACCACTCAGAAGAGTGACATATACAACTTTGGTGTCCTCCTTCTTGAAATGCTTGCAGGGAAGACTCCTTTGGGATATTCTGGTTATATGATCATGACATGGATGATCTTCCAAGGTGGGTTAGGTGGTTCGTGA 249 0.4618 ENDGCITDVGLTPLMNTSSTMSRSNGYRAPEASESRNITTQKSDIYNFGVLLLEMLAGKTPLGYSGYMIMTWMIFQGGLGGS 82
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme561235g00001 82 MobiDBLite consensus disorder prediction 16 36 - -
Trme561235g00001 82 SUPERFAMILY Protein kinase-like (PK-like) 5 77 IPR011009 -
Trme561235g00001 82 Gene3D Transferase(Phosphotransferase) domain 1 1 77 - -
Trme561235g00001 82 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 5 71 IPR046959 -
Trme561235g00001 82 Pfam Protein kinase domain 6 63 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme561235g00001 82 ProSiteProfiles Protein kinase domain profile. 1 82 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme561235g00001 Trme-Chr561235 1 249 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme561235g00001 1 62 Receptor kinase-like Gene Family AT5G58300 58.065 2.00e-18 75.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Trme561235g00001 Pkinase 1.1e-08 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme561235g00001 - - cam:101501552 117.472