Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme56065g00001 GTTCTTGTCAGGTTGTGTGAGGGTGGAGAATTACTGGACAGAATTCTAGATAGAGGTGGAAGATACACAGAGGATGATGCCAAAGTTATTCTTCTACAAATTCTGAATGTAGTTGCCTTTTGTCATCTTCAGGGAGTTGTTCATCGCGATCTAAAACCAGAGAATTTTCTTTTTGTCTCAAAAGACGAGGATGCTGTTTTGAAAGTTATTGACTTTGGTCTATCTGATTTTGTTAGGCCAGATTTTTTGGGATATCCTCACAGCTGTACAATGGAAGAATTGTGA 285 0.386 VLVRLCEGGELLDRILDRGGRYTEDDAKVILLQILNVVAFCHLQGVVHRDLKPENFLFVSKDEDAVLKVIDFGLSDFVRPDFLGYPHSCTMEEL 94
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme56065g00001 94 ProSiteProfiles Protein kinase domain profile. 1 94 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme56065g00001 94 Pfam Protein kinase domain 4 79 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme56065g00001 94 ProSitePatterns Serine/Threonine protein kinases active-site signature. 46 58 IPR008271 GO:0004672|GO:0006468
Trme56065g00001 94 PANTHER SERINE/THREONINE-PROTEIN KINASE 3 80 - -
Trme56065g00001 94 SUPERFAMILY Protein kinase-like (PK-like) 4 81 IPR011009 -
Trme56065g00001 94 Gene3D Transferase(Phosphotransferase) domain 1 2 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme56065g00001 Trme-Chr56065 2 743 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme56065g00001 1 80 EF-hand Containing Proteins AT3G50530 76.250 9.17e-42 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Trme56065g00001 Pkinase 6.1e-20 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme56065g00001 K13412 - gmx:100794478 150.599