Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Trme56059g00001 | GTGACTTTTTCAGATATTGGTGCATTGGATGATGTTAAAGAATCACTTCAAGAAGCAGTTATGCTACCCCTTAGAAGACCAGATCTATTCAAAGGTGATGGGGTTTTGAAGCCATGTAAAGGTGTATTGCTTTTTGGGCCTCCCGGTACAGGAAAAACAATGCTTGCAAAGGCAATTGCAAACGAAGCTGGAGCAAGTTTCATCAATGTCTCTGCGTCCACCATCACTGACCCGTGGTTCGGACAATCTGAAAAGACCGTCCGTGCTTTGTTTTCTCTAGCGGCAAAGGTTGCCCCAACTGTTATTTTCGTTGATGAAATTGATAGCATGCTTGCGCAGCGGGGGTCTAACTNNNNNNNNNNANNNNNNAGAAGCATTAAAAATGAATTCATGTCCCATTGGGATGGACTATTGTCAAAACCTGATGAGAGAATTATTGTTCTTGGTGCCACCAACATGCCATTTGACCTTGATGAAGCAGTTATAAGACGGTTCCAACGCAGGATCATGGTTGGTCTTCCGTCTGCTGAGAACAGGGAAATGATCTTGAAAACTATCTTANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNATATGACAGAAGGATATAGTGGAAGTGATCTTAAGAATCTGTGCACAACTGCAGCTTATCGCCCCGTTAAGGAGCTACTGAAACAGGAGAAGG | 697 | 0.3974 | VTFSDIGALDDVKESLQEAVMLPLRRPDLFKGDGVLKPCKGVLLFGPPGTGKTMLAKAIANEAGASFINVSASTITDPWFGQSEKTVRALFSLAAKVAPTVIFVDEIDSMLAQRGSNXXXXXXRSIKNEFMSHWDGLLSKPDERIIVLGATNMPFDLDEAVIRRFQRRIMVGLPSAENREMILKTILXXXXXXXXXXXXXXXMTEGYSGSDLKNLCTTAAYRPVKELLKQEK | 232 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Trme56059g00001 | 232 | Pfam | AAA+ lid domain | 203 | 229 | IPR041569 | - | |
| Trme56059g00001 | 232 | ProSitePatterns | AAA-protein family signature. | 145 | 164 | IPR003960 | GO:0005524|GO:0016887 | |
| Trme56059g00001 | 232 | Gene3D | - | 1 | 173 | IPR027417 | - | |
| Trme56059g00001 | 232 | Pfam | ATPase family associated with various cellular activities (AAA) | 42 | 172 | IPR003959 | GO:0005524|GO:0016887 | |
| Trme56059g00001 | 232 | SMART | AAA_5 | 38 | 175 | IPR003593 | GO:0016887 | |
| Trme56059g00001 | 232 | Gene3D | - | 174 | 230 | - | - | |
| Trme56059g00001 | 232 | FunFam | p-loop nucleoside triphosphate hydrolase superfamily protein | 1 | 176 | - | - | |
| Trme56059g00001 | 232 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 1 | 220 | IPR027417 | - | |
| Trme56059g00001 | 232 | PANTHER | AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED | 1 | 232 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Trme56059g00001 | Trme-Chr56059 | 2 | 911 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Trme56059g00001 | 1 | 232 | Calmodulin-binding Proteins | AT3G56690 | 36.864 | 2.56e-41 | 148 |