Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme56057g00001 ATGCCCGAGAGCAAGATCTATGAACAAGGGAGATCCCTAAAGATCCATTATTTGATAAAAGATATGTTTCATGTTTGCTTTGAATGCGGCAGAACCTTCAAAACTTTGCAGGGTTTGCATATCCATGAAAGTTCTCACAGTAAAGCACGATGTGATCAATGTGGAGAAATATTCTCATCTCCTCAAGCTTGTGGTCGCCATAGGAATACTCATCGAATAATAGAATATCATCCACCACCACATCCACCAATTCCAGAAATACCTTTTCAGTGCAATTATTGTGCAAGCAAATTTTCTACTGCGGAAGAACTTGACAACCATGTGGCTAACCGTCATTGA 339 0.3982 MPESKIYEQGRSLKIHYLIKDMFHVCFECGRTFKTLQGLHIHESSHSKARCDQCGEIFSSPQACGRHRNTHRIIEYHPPPHPPIPEIPFQCNYCASKFSTAEELDNHVANRH 112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme56057g00001 112 Gene3D Classic Zinc Finger 87 112 - -
Trme56057g00001 112 SMART c2h2final6 24 46 IPR013087 -
Trme56057g00001 112 SMART c2h2final6 89 112 IPR013087 -
Trme56057g00001 112 SMART c2h2final6 49 71 IPR013087 -
Trme56057g00001 112 ProSiteProfiles Zinc finger C2H2 type domain profile. 24 51 IPR013087 -
Trme56057g00001 112 SUPERFAMILY beta-beta-alpha zinc fingers 50 108 IPR036236 -
Trme56057g00001 112 Gene3D Classic Zinc Finger 22 71 - -
Trme56057g00001 112 ProSitePatterns Zinc finger C2H2 type domain signature. 51 71 IPR013087 -
Trme56057g00001 112 ProSiteProfiles Zinc finger C2H2 type domain profile. 89 112 IPR013087 -
Trme56057g00001 112 PANTHER ZINC FINGER PROTEIN 142 7 108 - -
Trme56057g00001 112 ProSiteProfiles Zinc finger C2H2 type domain profile. 49 71 IPR013087 -
Trme56057g00001 112 SUPERFAMILY beta-beta-alpha zinc fingers 23 59 IPR036236 -
Trme56057g00001 112 ProSitePatterns Zinc finger C2H2 type domain signature. 91 112 IPR013087 -
Trme56057g00001 112 ProSitePatterns Zinc finger C2H2 type domain signature. 26 46 IPR013087 -
Trme56057g00001 112 Pfam C2H2-type zinc finger 50 73 - -
Trme56057g00001 112 Pfam C2H2-type zinc finger 24 48 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme56057g00001 51 108 C2H2 Transcription Factor Family AT2G28710 33.871 8.65e-06 40.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trme56057g00001 zf-C2H2_6 0.0015 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme56057g00001 - K09228 xen:124442972 71.6329