Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme56052g00001 ATGGCTGTTCATACAAAATATCGTCTCATTACTTACTCACCAGAGATTGTAGATGGGAAGCCTATTTTTGTTTCGTCCAACTGTCTTCCGACCAAGGCGTTGAAATATGAGCCGGCAGGTCACTCTTTTCACTCTGCTGCACTTAAACTTATTGGTGTTAAGGAAGAAAAAGAAAACAAAGAGGCTGATAATAAGAAAGTGGTTGGTGACAAGGAACAAGCTTATTTGCCATCTGATTCTTACAGCAGCAAGAGCAAAAAGAAATCTGGCGACGGAGACAAGCAACAACAGGATCACTATGCATTGTTGGGTTTGAGTCATCTTAGGTATCTTGCTACAGAGGATCAAATTCGTAAAAGTTATCGTGAAGCTGCACTGAGGTTTCATCCAGATAAACAAGCTGCCCTTCTTCTTGCTGAGAAAACTGAAGTTGCGAAGGAGGCAAAGAAGGATGAAATAGAAACTCATTTCAAGGCAATTCAAGAGGCATATGAAGTGTTGGTTGATCCCACGAAAAGAAGAATTTACGATTCTACCGACGAGTTTGATGACGAGATTCCCACCGACTGTGCTCCACAAGACTTCTTCAAGGTGTTTGGTCCAGCTTTTATGAGGAATGGACGGTGGTCGGTTAATCAACCAATTCCATCACTGGGTGATGATAAGACTTCAATAAAGGAAGTTGACAGTTTCTATGATTTTTGGTATTCCTTTAAAAGCTGGAGGGAGTTTCCCCAGGCTGATGAGTTTGATCTTGAGCAAGCCGAGACTCGAGATCATAAAAGATGGATGGAAAGGCAGAATGCAAAACTGTC 815 0.4184 MAVHTKYRLITYSPEIVDGKPIFVSSNCLPTKALKYEPAGHSFHSAALKLIGVKEEKENKEADNKKVVGDKEQAYLPSDSYSSKSKKKSGDGDKQQQDHYALLGLSHLRYLATEDQIRKSYREAALRFHPDKQAALLLAEKTEVAKEAKKDEIETHFKAIQEAYEVLVDPTKRRIYDSTDEFDDEIPTDCAPQDFFKVFGPAFMRNGRWSVNQPIPSLGDDKTSIKEVDSFYDFWYSFKSWREFPQADEFDLEQAETRDHKRWMERQNAKLS 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme56052g00001 272 SUPERFAMILY Chaperone J-domain 93 176 IPR036869 -
Trme56052g00001 272 CDD DnaJ 98 169 IPR001623 -
Trme56052g00001 272 ProSitePatterns Nt-dnaJ domain signature. 157 176 IPR018253 -
Trme56052g00001 272 SMART dnaj_3 97 172 IPR001623 -
Trme56052g00001 272 ProSiteProfiles dnaJ domain profile. 98 180 IPR001623 -
Trme56052g00001 272 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 2 1 271 IPR044634 GO:0006450|GO:0030544|GO:0043022|GO:0051083
Trme56052g00001 272 PRINTS DnaJ domain signature 103 121 IPR001623 -
Trme56052g00001 272 PRINTS DnaJ domain signature 121 136 IPR001623 -
Trme56052g00001 272 PRINTS DnaJ domain signature 152 172 IPR001623 -
Trme56052g00001 272 Pfam DnaJ domain 98 177 IPR001623 -
Trme56052g00001 272 Gene3D DnaJ domain 81 191 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme56052g00001 Trme-Chr56052 1 815 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme56052g00001 99 270 C2H2 Transcription Factor Family AT1G74250 28.037 4.52e-12 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme56052g00001 K09522 - gmx:100814414 452.595