Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme559g00002 ATGGCAGAAATGGCAGTGTCTTTTGCAATTGACCAACTGCTTCCATTGTTAACACATGAAGTCAATCTACTCAAAGGTGTTCACAAGGAATTWGCAGACATTAAAGATGAACTMGAAAGCATCCAAGCCTTCCTTAAAGATGCTGATAAGAAAGCTGCAGCTGAAGGAAATAACACCAGTGAAGGAGTCAAAAGTTGGGTGAAGCAGGTTAGGGAAGTAGCTTTTCGCATAGAAAATATAATTGACGATTATCTGATCCATATGGGGCAGCAGCCTCGTGATCCTAGATGTGTAGCTTTACTCCATAAGATTGCTCACTCACTCAAAACTATAATCCCTCGCCACCGAATAGCATCTGAGATTCAAGACATTAAATCACATGTTTGTAGGATCAAGCAAAGAAGTGAAAGATATGGCTTTCAACGTTCTTTTGAGCAAGGGTCAAGCAGTTCTAGAGGAAGTCGGAATGCTAAGTGGCATGACCCTCGAGGGGCTTCTCTTTACATTGATGAAACTGAAGTTGTCGGCTTTGAAAAACAAAGAGACAGGTTGATTGATTGGATGGTAAAGGGAAGGGAAGAACGCACTGTGATTTCTGTAGTTGGTATGGGAGGGCAAGGAAAAACAACTCTAGCCAAAAAAGTTTTTGACAGCAATGATGTCATTGGACACTTTGATTGTCGTGTATGGATTACAGTCTCTCAATCATATAATGTTGAAGGATTGTTGAGGGACCTGTTGCTAAAGTTTTATAAACAAAATGGAGACAATCCTCCTAAAGATATCTTTCAAATGGATCAAGGGTCATTGACTAATCAAGTGAGAAACTACTTGCAACAAACCAGGTACGTTGTTGTGTTTGATGATGTTTGGAATGTACATTTTTGGGATGATATTGAGTTTGCTGTAATTGATAATCAAAATGGAAGTAAGATATTGATAACAACAAGAAACCTCGATGTTGTGGTATCTTGTAAAAAATCTTCTTTCATTGAAGTTCTTGAGTTGCAACCTTTAACTGAAGAACAATCTTTGGAGTTGTTCAATAAGAATGCATTTAGATTTGACTATTCTGGATGTTGTCCAAAAGAGCTCATTGGTATAGCTAATGAAATCGTTAAAAAATGCAAGGGTTTACCACTAGCAATTGTTGCCATTGGTGGTCTTTTGTGTACAAGAGAGAAAAATGTGTTTGAGTGGCAGAGATTTAGAGAAAATCTAAGTTTTGAATTAAAGAAAGATACACATCTAACTGGGATAAAAGAAATTTTAGGCTTAAGTTACGATGATTTGCCTTACTTTCTCAAGTCATGCTTGTTGTATTTTGGAATATATCCTGAAGATTATGAAGTTATAACAAAGAGAGTGATTCGACAGTGGATAGCTGAAGGGTTTGTGAAGGAGGAAAGGGGGAAGACTTTGGAAGAAGTTGCAGAAGGATATTTAATAGAGTTGATTCATAGAAGCTTGGTGCAAGTATCTACAATTAGAATTGATGGTAAAGTTGAAGGTTGTCGTGTTCACGATCTAATACGTGAGATGATCCTTGAAAAAATTGAGGATTTAAACTTTTGTAAGCATATTAGTGATGATGGTCAGTCGTCTTTAAGTGGAATCATTTGA 1623 0.3709 MAEMAVSFAIDQLLPLLTHEVNLLKGVHKEXADIKDELESIQAFLKDADKKAAAEGNNTSEGVKSWVKQVREVAFRIENIIDDYLIHMGQQPRDPRCVALLHKIAHSLKTIIPRHRIASEIQDIKSHVCRIKQRSERYGFQRSFEQGSSSSRGSRNAKWHDPRGASLYIDETEVVGFEKQRDRLIDWMVKGREERTVISVVGMGGQGKTTLAKKVFDSNDVIGHFDCRVWITVSQSYNVEGLLRDLLLKFYKQNGDNPPKDIFQMDQGSLTNQVRNYLQQTRYVVVFDDVWNVHFWDDIEFAVIDNQNGSKILITTRNLDVVVSCKKSSFIEVLELQPLTEEQSLELFNKNAFRFDYSGCCPKELIGIANEIVKKCKGLPLAIVAIGGLLCTREKNVFEWQRFRENLSFELKKDTHLTGIKEILGLSYDDLPYFLKSCLLYFGIYPEDYEVITKRVIRQWIAEGFVKEERGKTLEEVAEGYLIELIHRSLVQVSTIRIDGKVEGCRVHDLIREMILEKIEDLNFCKHISDDGQSSLSGII 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme559g00002 540 Gene3D - 434 518 IPR036388 -
Trme559g00002 540 Pfam NB-ARC domain 178 430 IPR002182 GO:0043531
Trme559g00002 540 CDD RX-CC_like 2 132 IPR038005 -
Trme559g00002 540 Gene3D - 4 118 - -
Trme559g00002 540 Gene3D - 166 333 IPR027417 -
Trme559g00002 540 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 159 442 IPR027417 -
Trme559g00002 540 PRINTS Disease resistance protein signature 197 212 - -
Trme559g00002 540 PRINTS Disease resistance protein signature 277 291 - -
Trme559g00002 540 PRINTS Disease resistance protein signature 376 390 - -
Trme559g00002 540 FunFam Probable disease resistance protein At1g61300 160 329 - -
Trme559g00002 540 FunFam Probable disease resistance protein At1g63360 428 517 - -
Trme559g00002 540 Pfam Rx N-terminal domain 5 96 IPR041118 -
Trme559g00002 540 Gene3D - 338 432 IPR042197 -
Trme559g00002 540 PANTHER DISEASE RESISTANCE PROTEIN RP 33 527 IPR044974 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme559g00002 Trme-Chr559 1723 3345 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme559g00002 198 387 WRKY Transcription Factor Family AT5G45050 27.979 1.84e-07 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme559g00002 K13457 - mtr:25489074 803.512