Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme55885g00001 TGTCTTGGCATAGCAAAGGGATTAGCTTTTCTTCATGAAGAATCAGCATTGAAAATAGTACACAGGGACATTAAGGCAAGTAATGTATTACTTGACAAGGATTTGAATGCCAAGATCTCTGACTTTGGTTTAGCTAAGCTTGACGAAGAAGGGAATACCCATATCAGTACACGGATAGCAGGAACAGTTGGATACATGGCTCCAGAATATGCTATGCGGGGTTACTTGACTGATAAGGCAGATGTATATAGCTTTGGAGTTGTAGCTTTAGAGATTGTTAGCGGAAAAAGCAATACAAATTTTAATCAAATGGAGGAGTTTTCATATCTTCTGGATTGGGCCTGTGATCTTCAAGAGCAAGGAAACATTTTGGAGTTAGTGGATCCAAGTCTTCTTGGTTCAAGGTACTCCACAAAGGAAGCCATGAGAATGCTTAATGTGGCATTCTTATGCACAAACACATCTCCCACTCTTAGGCCATCGATGTCATCGGTAGTGAGCATGCTTGAAGGAAAAACTCCGATCCAAACGACAGTAATCAATCGGAGGGACAGCGGTCAACATGCAAGAGTCAAATCCTCTGAGTTTCTGTCACAAGATAGTCAAGCATCAGCAAATGGGCCAAGGGTATACTCCTCTGCAAGGTTTTAA 651 0.4163 CLGIAKGLAFLHEESALKIVHRDIKASNVLLDKDLNAKISDFGLAKLDEEGNTHISTRIAGTVGYMAPEYAMRGYLTDKADVYSFGVVALEIVSGKSNTNFNQMEEFSYLLDWACDLQEQGNILELVDPSLLGSRYSTKEAMRMLNVAFLCTNTSPTLRPSMSSVVSMLEGKTPIQTTVINRRDSGQHARVKSSEFLSQDSQASANGPRVYSSARF 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme55885g00001 216 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 1 196 - -
Trme55885g00001 216 SUPERFAMILY Protein kinase-like (PK-like) 1 170 IPR011009 -
Trme55885g00001 216 ProSitePatterns Serine/Threonine protein kinases active-site signature. 19 31 IPR008271 GO:0004672|GO:0006468
Trme55885g00001 216 Gene3D Transferase(Phosphotransferase) domain 1 1 194 - -
Trme55885g00001 216 MobiDBLite consensus disorder prediction 190 216 - -
Trme55885g00001 216 FunFam Putative LRR receptor-like serine/threonine-protein kinase 1 181 - -
Trme55885g00001 216 SMART serkin_6 1 169 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme55885g00001 216 Pfam Protein kinase domain 3 166 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme55885g00001 216 ProSiteProfiles Protein kinase domain profile. 1 179 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme55885g00001 216 MobiDBLite consensus disorder prediction 191 209 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme55885g00001 Trme-Chr55885 5 912 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme55885g00001 1 203 Receptor kinase-like Gene Family AT1G53440 75.728 8.79e-100 309
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trme55885g00001 Pkinase 9.2e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme55885g00001 - - gmx:121173337 320.857